Glyma.10g070700

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.10g070700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.10g070700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.10g070700

Feature Type:	gene_model
Chromosome:	Gm10
Start:	7105215
stop:	7113185
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g070700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10070.1	AT	TBP-associated factor 12	JGI	N/A	IEA
GO:0006352	GO-bp	DNA-templated transcription, initiation	EnsemblGenomes	N/A	IEA
GO:0006352	GO-bp	DNA-templated transcription, initiation	JGI	N/A	IEA
GO:0043966	GO-bp	histone H3 acetylation	EnsemblGenomes	N/A	IEA
GO:0051123	GO-bp	RNA polymerase II transcriptional preinitiation complex assembly	EnsemblGenomes	N/A	IEA
GO:0000124	GO-cc	SAGA complex	EnsemblGenomes	N/A	IEA
GO:0005669	GO-cc	transcription factor TFIID complex	EnsemblGenomes	N/A	IEA
GO:0005669	GO-cc	transcription factor TFIID complex	JGI	N/A	IEA
GO:0046695	GO-cc	SLIK (SAGA-like) complex	EnsemblGenomes	N/A	IEA
GO:0001102	GO-mf	RNA polymerase II activating transcription factor binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0004402	GO-mf	histone acetyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0017025	GO-mf	TBP-class protein binding	EnsemblGenomes	N/A	IEA
GO:0046982	GO-mf	protein heterodimerization activity	EnsemblGenomes	N/A	IEA
KOG1142	KOG	Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA)	JGI	N/A	IEA
PTHR12264	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR12264:SF4	Panther		JGI	N/A	IEA
PF03847	PFAM	Transcription initiation factor TFIID subunit A	JGI	N/A	IEA

Expression Patterns of Glyma.10g070700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g070700 not represented in the dataset	Glyma.10g070700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.10g070700

Paralog	Evidence	Comments
Glyma.11g210100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g070700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g08250	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.10g070700

Limit To All Plant Sequences

>Glyma.10g070700.2 sequence-type=transcript locus=Glyma.10g070700 ID=Glyma.10g070700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTACATGAATCCGAATTACCGAATTCCCTGTAAATTTCAAGCCATATTTGTTCCATATCACAGCTTAAGCAGAGCCCCAGATTACACCAACGTTCACTGAGTGACATTCCTCCGTTTTAAACTTTCCAACCGCATTCCCAATGGATCCTCAAGCTCCGGCGACGGCCACCACCGCTCGAAGCGCCGCCGCGGAACCCTCGCAATCTCAACCCCCAAAACCAtcccctcctctccctctccctccaccttccACATCATCAACCCCTCCCATCTCAGCTCCTCCACAGCCTCccccaaacactaaccctagccctaaccctaaccccagccctgcccctggcccgggcccaattcaagccccgagccccaaaccccccactcccactcccactaccactcccacgccTCCCCAGCCCTTCAACCGCGCTTTGTCGCCGCCATCGCAACCGCAGTTCCCGCACTACTCCTCCCCTTCTCCGCCTTCCTCCGCTCCCGGCGCCGCCCCGCCGCCGCGGGGCGGCATGGCGATCGGTGTGCCCGCGCACCACCAGAGCCCCTCCCCTCCGTTTTCGTCCTCCTTCGGTCAACATTTTGGGGGGTTGGGTCGAACCGGAGTCAACGTCGCTGAATCTACCTCCAATTCAAGCACCTCTCAAGTGAGGACGCCGGTGCAAGGAACGGGGATGTTAGGGTCTCAAATGCGGCCAAGTGGAATCGGTGCACATCAACAGAGACCCGTGCAATCGTCGCTTAGACCTCCACCACCCTCTGCACCGAATAATCAACCGGCTGGTTCACAAAGTTTTCAAGGGCATGGACTTATGAGATCCTCATCAGTGGGATCACCTGCTACTCCGTCTCCGAGTTCATCACTAAGCATGCAGTCACTTAATCAGCCATGGTTGTCATCTGGGCCACAAGGGAAGCCTCCTTTGCCATCCGCAGCTTATAGGCAGCAATTGAACCCACAATCCATGCAGCAAAGGCCACATATTCCTCTGCAGCAGCAATCCACACCAACACCTTTGCTGGCTAATCAATCGCAGGAGCATTTTGGGCAACAAGTTCTGCCACCCAGGGCTCCTCTACATGTACCTCATCAGCCACAGATTATGAGGGTACACGGGCCAGGAAATCAGAAACCTTCATCTCTTGTGGCAGCACAATCTAGTGCAGCTCAACCAGGGACTCGAAGTAGATTAACAAACACAGATACTGATGAATCTTCTAATAGTATTCTCAGCAAAAGAAGTATCCATGAGCTAGTCAATCAGGTAGATCCATTGGAGAAGTTGGAGCCTGAAGTTGCAGACATTCTTGTAGATATTGCAGAAAATTTTCTAGAGTCTATAACTAGGTCTGGCTGTTCATTAGCCAAGCATCGGAAATCAACAACTTTAGAAGCAAAGGACATACTGCTCCATCTTGAGAAAAATTGGAATATGACACTTCTTGGGTTTGGCGGTGATGATATTAAAAGCTACAGAAGACCGACTACAAGTGATATTCACAAAGAGCGTCTAACAGTTATAAAAAAATCAATGGCTGCAACTGAGGCAGCACATGGGAAGGGCTCTGCTGGCCAGGCATCTGGTAGTGCAAAGGGTAATCAAGGGAAGACACCTTTGAATATCATTGGCTTGCCAAACCTAAAAAATTTATAGGATGCATGCCGTGTTTATGCTTTACACAACAATGGAGGAACCACTTTGGTGGAGAACCTGAGCAGGAGTCTGAATTTAGAAGCGTTACCGAAAACAAGATGAGGGGAATCAAGATTGATATGGAATCGTCTTGCAACTGAAAACCGTAAAGAAAGGAAGAAAAATGATTTGGCTTCAGCTACATCAAATGTTTTTGTGTTGATAATAGTAAGAAAGTCATTGGTTGGGTAGGCTGGGCCATTTATTGTTATAATCGACTTTCTAATTTAGATGCAAATAGTATCCTGAAATATATATGCAATTA

Coding sequences of Glyma.10g070700

Limit To All Plant Sequences

>Glyma.10g070700.1 sequence-type=CDS polypeptide=Glyma.10g070700.1.p locus=Glyma.10g070700 ID=Glyma.10g070700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCTCAAGCTCCGGCGACGGCCACCACCGCTCGAAGCGCCGCCGCGGAACCCTCGCAATCTCAACCCCCAAAACCATCCCCTCCTCTCCCTCTCCCTCCACCTTCCACATCATCAACCCCTCCCATCTCAGCTCCTCCACAGCCTCCCCCAAACACTAACCCTAGCCCTAACCCTAACCCCAGCCCTGCCCCTGGCCCGGGCCCAATTCAAGCCCCGAGCCCCAAACCCCCCACTCCCACTCCCACTACCACTCCCACGCCTCCCCAGCCCTTCAACCGCGCTTTGTCGCCGCCATCGCAACCGCAGTTCCCGCACTACTCCTCCCCTTCTCCGCCTTCCTCCGCTCCCGGCGCCGCCCCGCCGCCGCGGGGCGGCATGGCGATCGGTGTGCCCGCGCACCACCAGAGCCCCTCCCCTCCGTTTTCGTCCTCCTTCGGTCAACATTTTGGGGGGTTGGGTCGAACCGGAGTCAACGTCGCTGAATCTACCTCCAATTCAAGCACCTCTCAAGTGAGGACGCCGGTGCAAGGAACGGGGATGTTAGGGTCTCAAATGCGGCCAAGTGGAATCGGTGCACATCAACAGAGACCCGTGCAATCGTCGCTTAGACCTCCACCACCCTCTGCACCGAATAATCAACCGGCTGGTTCACAAAGTTTTCAAGGGCATGGACTTATGAGATCCTCATCAGTGGGATCACCTGCTACTCCGTCTCCGAGTTCATCACTAAGCATGCAGTCACTTAATCAGCCATGGTTGTCATCTGGGCCACAAGGGAAGCCTCCTTTGCCATCCGCAGCTTATAGGCAGCAATTGAACCCACAATCCATGCAGCAAAGGCCACATATTCCTCTGCAGCAGCAATCCACACCAACACCTTTGCTGGCTAATCAATCGCAGGAGCATTTTGGGCAACAAGTTCTGCCACCCAGGGCTCCTCTACATGTACCTCATCAGCCACAGATTATGAGGGTACACGGGCCAGGAAATCAGAAACCTTCATCTCTTGTGGCAGCACAATCTAGTGCAGCTCAACCAGGGACTCGAAGTAGATTAACAAACACAGATACTGATGAATCTTCTAATAGTATTCTCAGCAAAAGAAGTATCCATGAGCTAGTCAATCAGGTAGATCCATTGGAGAAGTTGGAGCCTGAAGTTGCAGACATTCTTGTAGATATTGCAGAAAATTTTCTAGAGTCTATAACTAGGTCTGGCTGTTCATTAGCCAAGCATCGGAAATCAACAACTTTAGAAGCAAAGGACATACTGCTCCATCTTGAGAAAAATTGGAATATGACACTTCTTGGGTTTGGCGGTGATGATATTAAAAGCTACAGAAGACCGACTACAAGTGATATTCACAAAGAGCGTCTAACAGTTATAAAAAAATCAATGGCTGCAACTGAGGCAGCACATGGGAAGGGCTCTGCTGGCCAGGCATCTGGTAGTGCAAAGGGTAATCAAGGGAAGACACCTTTGAATATCATTGGCTTGCCAAACCTAAAAAATTTATAG

>Glyma.10g070700.2 sequence-type=CDS polypeptide=Glyma.10g070700.2.p locus=Glyma.10g070700 ID=Glyma.10g070700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCTCAAGCTCCGGCGACGGCCACCACCGCTCGAAGCGCCGCCGCGGAACCCTCGCAATCTCAACCCCCAAAACCATCCCCTCCTCTCCCTCTCCCTCCACCTTCCACATCATCAACCCCTCCCATCTCAGCTCCTCCACAGCCTCCCCCAAACACTAACCCTAGCCCTAACCCTAACCCCAGCCCTGCCCCTGGCCCGGGCCCAATTCAAGCCCCGAGCCCCAAACCCCCCACTCCCACTCCCACTACCACTCCCACGCCTCCCCAGCCCTTCAACCGCGCTTTGTCGCCGCCATCGCAACCGCAGTTCCCGCACTACTCCTCCCCTTCTCCGCCTTCCTCCGCTCCCGGCGCCGCCCCGCCGCCGCGGGGCGGCATGGCGATCGGTGTGCCCGCGCACCACCAGAGCCCCTCCCCTCCGTTTTCGTCCTCCTTCGGTCAACATTTTGGGGGGTTGGGTCGAACCGGAGTCAACGTCGCTGAATCTACCTCCAATTCAAGCACCTCTCAAGTGAGGACGCCGGTGCAAGGAACGGGGATGTTAGGGTCTCAAATGCGGCCAAGTGGAATCGGTGCACATCAACAGAGACCCGTGCAATCGTCGCTTAGACCTCCACCACCCTCTGCACCGAATAATCAACCGGCTGGTTCACAAAGTTTTCAAGGGCATGGACTTATGAGATCCTCATCAGTGGGATCACCTGCTACTCCGTCTCCGAGTTCATCACTAAGCATGCAGTCACTTAATCAGCCATGGTTGTCATCTGGGCCACAAGGGAAGCCTCCTTTGCCATCCGCAGCTTATAGGCAGCAATTGAACCCACAATCCATGCAGCAAAGGCCACATATTCCTCTGCAGCAGCAATCCACACCAACACCTTTGCTGGCTAATCAATCGCAGGAGCATTTTGGGCAACAAGTTCTGCCACCCAGGGCTCCTCTACATGTACCTCATCAGCCACAGATTATGAGGGTACACGGGCCAGGAAATCAGAAACCTTCATCTCTTGTGGCAGCACAATCTAGTGCAGCTCAACCAGGGACTCGAAGTAGATTAACAAACACAGATACTGATGAATCTTCTAATAGTATTCTCAGCAAAAGAAGTATCCATGAGCTAGTCAATCAGGTAGATCCATTGGAGAAGTTGGAGCCTGAAGTTGCAGACATTCTTGTAGATATTGCAGAAAATTTTCTAGAGTCTATAACTAGGTCTGGCTGTTCATTAGCCAAGCATCGGAAATCAACAACTTTAGAAGCAAAGGACATACTGCTCCATCTTGAGAAAAATTGGAATATGACACTTCTTGGGTTTGGCGGTGATGATATTAAAAGCTACAGAAGACCGACTACAAGTGATATTCACAAAGAGCGTCTAACAGTTATAAAAAAATCAATGGCTGCAACTGAGGCAGCACATGGGAAGGGCTCTGCTGGCCAGGCATCTGGTAGTGCAAAGGGTAATCAAGGGAAGACACCTTTGAATATCATTGGCTTGCCAAACCTAAAAAATTTATAG

Predicted protein sequences of Glyma.10g070700

Limit To All Plant Sequences

>Glyma.10g070700.1.p sequence-type=predicted peptide transcript=Glyma.10g070700.1 locus=Glyma.10g070700 ID=Glyma.10g070700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPQAPATATTARSAAAEPSQSQPPKPSPPLPLPPPSTSSTPPISAPPQPPPNTNPSPNPNPSPAPGPGPIQAPSPKPPTPTPTTTPTPPQPFNRALSPPSQPQFPHYSSPSPPSSAPGAAPPPRGGMAIGVPAHHQSPSPPFSSSFGQHFGGLGRTGVNVAESTSNSSTSQVRTPVQGTGMLGSQMRPSGIGAHQQRPVQSSLRPPPPSAPNNQPAGSQSFQGHGLMRSSSVGSPATPSPSSSLSMQSLNQPWLSSGPQGKPPLPSAAYRQQLNPQSMQQRPHIPLQQQSTPTPLLANQSQEHFGQQVLPPRAPLHVPHQPQIMRVHGPGNQKPSSLVAAQSSAAQPGTRSRLTNTDTDESSNSILSKRSIHELVNQVDPLEKLEPEVADILVDIAENFLESITRSGCSLAKHRKSTTLEAKDILLHLEKNWNMTLLGFGGDDIKSYRRPTTSDIHKERLTVIKKSMAATEAAHGKGSAGQASGSAKGNQGKTPLNIIGLPNLKNL*

>Glyma.10g070700.2.p sequence-type=predicted peptide transcript=Glyma.10g070700.2 locus=Glyma.10g070700 ID=Glyma.10g070700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPQAPATATTARSAAAEPSQSQPPKPSPPLPLPPPSTSSTPPISAPPQPPPNTNPSPNPNPSPAPGPGPIQAPSPKPPTPTPTTTPTPPQPFNRALSPPSQPQFPHYSSPSPPSSAPGAAPPPRGGMAIGVPAHHQSPSPPFSSSFGQHFGGLGRTGVNVAESTSNSSTSQVRTPVQGTGMLGSQMRPSGIGAHQQRPVQSSLRPPPPSAPNNQPAGSQSFQGHGLMRSSSVGSPATPSPSSSLSMQSLNQPWLSSGPQGKPPLPSAAYRQQLNPQSMQQRPHIPLQQQSTPTPLLANQSQEHFGQQVLPPRAPLHVPHQPQIMRVHGPGNQKPSSLVAAQSSAAQPGTRSRLTNTDTDESSNSILSKRSIHELVNQVDPLEKLEPEVADILVDIAENFLESITRSGCSLAKHRKSTTLEAKDILLHLEKNWNMTLLGFGGDDIKSYRRPTTSDIHKERLTVIKKSMAATEAAHGKGSAGQASGSAKGNQGKTPLNIIGLPNLKNL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain