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Report for Sequence Feature Glyma.10g066000

Feature Type:gene_model
Chromosome:Gm10
Start:6387821
stop:6397631
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g066000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03730.1AT Protein kinase superfamily protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0004871GO-mf signal transducer activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0192 KOG Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs JGI N/AIEA
PTHR23257Panther SERINE-THREONINE PROTEIN KINASE JGI N/AIEA
PTHR23257:SF80Panther PAS DOMAIN-CONTAINING PROTEIN TYROSINE KINASE FAMILY PROTEIN JGI N/AIEA
PF07714PFAM Protein tyrosine kinase JGI N/AIEA

Proteins Associated with Glyma.10g066000
LocusGene SymbolProtein Name
Raf1-2 Raf1 proto-oncogene serine/threonine protein kinase gene 2

Expression Patterns of Glyma.10g066000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g066000
ParalogEvidenceComments
Glyma.13g151100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g066000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g07610 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g066000
>Glyma.10g066000.1 sequence-type=CDS polypeptide=Glyma.10g066000.1.p locus=Glyma.10g066000 ID=Glyma.10g066000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGAAATGCCTGCCAGAAGATCCAACTATTCGCTCCTCAGCCAAATTCCCGACGACCAGTTCTCCTCCGCCGCCGCTCCCTCATCCTCCGGCGACGGCAAGGCCGGCCGTGCCGGAAAGTCCGACCGTGCCGCCTTCGAATGGGACCTCGTCGCTGATCACCGGGCCGCCAACCGGATCGGAAACGTCTACTCCTCGATAGGCCTGCAGCGCCAGTCCAGCGGGAGCAGCTACGGCGAGAGCTCGCTCTCCGGCGGCGGCGACTTCTACGCTCCGACGATCTCCACGGCGGCGGCCAGCGACGTCGACGCCTTCGGCTACCTCCACGACGAGCGAAGCAAGTTCTCGGAGGCGGCGCCGGCGAGGATCGCCGGCTCCTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAGAGCTACCAGCTGCAGCTCGCGCTCGCTCTGCGGCTCTCGTCCGACGCCACGTGCGCCGATGATCCCAATTTCCTCGATCCGGTGCCGGACGACGGCGCGCTGCGGCTCTTGTGGTCGGCCGAGGCAGTTTCGCATAGGTTTTGGGTGAATGGTTGCCTATCATACTCTGACAAAATTCCAGATGGCTTTTACCTAATTCACGGGATGGATTCCTTTGTCTGGACCATGTGCACTGATCTGCATGAAAATGGACGAATTCCATCAGTTGATATGCTGAAGTCTGTGAATCCCTGTGTCGTTCCTTCACTCGAAGTAGTTATGGTGGATCGATGCAGTGACCCCAGCTTAAGAGATCTGCAAAATAGTGTTCATAACATTTCTTTCACTAGCATAACAACAACAGATGTTGTAGATAAACTTTCCAAGCTGGTTTGCAACCGTATGGGGGGTTCAGCTTCTGTTGGGGAAGATCACTTTTTTTCCATCTGGAGGAATTGCAGTAATGATCTGAAAGATTGCTTAGGATCTGTTGTTATTCCCATAGGTAGTCTATCTGTTGGCCTCTGCCGGCATCGTGCTATATTATTCAAAGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGATTGAGAGGGAGTATCTTGTTGATTTAATTGGAAAGCCAGGAAACTTATCCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCACGACTTAAACCAGCTGAAACTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTCGGACTGTGTGTCTCTTGAGCTTGTCTTTGACAACAATTCTGCAGAACAGTTTGATGGGAAGTGCAAAGACAGGAATAACCCTAGGCCAATTTTGACTGACAGCAATAGAAGTTCTCACCTTCCTCTGCATCCTCAAGATTCTCATCCAAGCTCACGGGAACAAGGTTCCGAAACATATCAATCATGTAACCCTCCTCAGAACATTGTAGACTCGACTGTGGGAAAGTATCCACCACCAATAAAGCATAAGCGTCCTGCTGGTATACCAACCCCATTAGCACTTACAAATACTAATGATGACATGATTGAGGGCAAGAGGTTTGCTGAAGGAAGTCAACTGATTCCTAGCAAACATGCTCGAGAGCTTAACCTTGACATGGAGGATTTGGACATACCATGGTGCGATCTTGTTTTAAGAGAGAAAATAGGGTCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGACGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCTTGCTGAGCGCTTCAAGGAATTCCTAAGGGAGGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAGGTCTGGTGCCAAAGAAGTATTGGATGAGCGGCGTAGGCTTGGTATGGCTTATGACGTGGCAAAGGGGATGAATTATCTTCATAAACGTAATCCCCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACATTTCTCTCATCCAAATCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAGGTTCTTCGTGATGAGCCATCGAATGAGAAGTCTGATGTTTACAGCTTTGGTGTAATCTTATGGGAGCTTGCAACATTGCAACAGCCATGGATTAATTTAAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGGAAAAGGCTAGAGATCCCACATGATGTGAATCCTCAAGTAGCTGCACTAATTGATGCTTGCTGGGCGAATGAGCCTTGGAAACGTCCTTCTTTTGCCAGTATTATGGATTCTTTGAGGCCATTGCTCAAACCCCCTACACCTCAACCTGGTTGTCCAAGCATGCCATTACTGACCTGA
Predicted protein sequences of Glyma.10g066000
>Glyma.10g066000.1.p sequence-type=predicted peptide transcript=Glyma.10g066000.1 locus=Glyma.10g066000 ID=Glyma.10g066000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMEMPARRSNYSLLSQIPDDQFSSAAAPSSSGDGKAGRAGKSDRAAFEWDLVADHRAANRIGNVYSSIGLQRQSSGSSYGESSLSGGGDFYAPTISTAAASDVDAFGYLHDERSKFSEAAPARIAGSSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPVPDDGALRLLWSAEAVSHRFWVNGCLSYSDKIPDGFYLIHGMDSFVWTMCTDLHENGRIPSVDMLKSVNPCVVPSLEVVMVDRCSDPSLRDLQNSVHNISFTSITTTDVVDKLSKLVCNRMGGSASVGEDHFFSIWRNCSNDLKDCLGSVVIPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDASSCLVRFGIEREYLVDLIGKPGNLSEPDSLLNGPSSISFSSPLRFPRLKPAETTIDFRSLAKQYFSDCVSLELVFDNNSAEQFDGKCKDRNNPRPILTDSNRSSHLPLHPQDSHPSSREQGSETYQSCNPPQNIVDSTVGKYPPPIKHKRPAGIPTPLALTNTNDDMIEGKRFAEGSQLIPSKHARELNLDMEDLDIPWCDLVLREKIGSGSFGTVHRAEWNGSDVAVKILMEQDFLAERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRSGAKEVLDERRRLGMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWINLNPAQVVAAVGFKGKRLEIPHDVNPQVAALIDACWANEPWKRPSFASIMDSLRPLLKPPTPQPGCPSMPLLT*






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