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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10050.1 | AT | L-O-methylthreonine resistant 1 | JGI | N/A | IEA |
| GO:0006520 | GO-bp | cellular amino acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009082 | GO-bp | branched-chain amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009097 | GO-bp | isoleucine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009097 | GO-bp | isoleucine biosynthetic process | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0004794 | GO-mf | L-threonine ammonia-lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0004794 | GO-mf | L-threonine ammonia-lyase activity | JGI | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | EnsemblGenomes | N/A | IEA |
| KOG1250 | KOG | Threonine/serine dehydratases | JGI | N/A | IEA |
| PTHR10314 | Panther | SER/THR DEHYDRATASE, TRP SYNTHASE | JGI | N/A | IEA |
| PTHR10314:SF30 | Panther | THREONINE DEHYDRATASE, MITOCHONDRIAL | JGI | N/A | IEA |
| PF00291 | PFAM | Pyridoxal-phosphate dependent enzyme | JGI | N/A | IEA |
| PF00585 | PFAM | C-terminal regulatory domain of Threonine dehydratase | JGI | N/A | IEA |
| BRANCHED-CHAIN-AA-SYN-PWY | SoyCyc9 | superpathway of branched chain amino acid biosynthesis | Plant Metabolic Network | ISS | |
| ILEUSYN-PWY | SoyCyc9 | L-isoleucine biosynthesis I (from threonine) | Plant Metabolic Network | ISS | |
| PWY-3001 | SoyCyc9 | superpathway of L-isoleucine biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-54243 | SoyCyc9-rxn | threonine ammonia-lyase | Plant Metabolic Network | ISS |
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Glyma.10g064000 not represented in the dataset |
Glyma.10g064000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g148600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g07340 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g064000.1 sequence-type=CDS polypeptide=Glyma.10g064000.1.p locus=Glyma.10g064000 ID=Glyma.10g064000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAGCGTTGCGCGTCGCCCCCACAACCCCACCTCTCCTCCGCCGCCACCACCCTCTCCGCCAAATGGCGCGCCACCCCCTCACAGCGCGCCCCCGCCGCGCGCCCCTCATCGCCGCCACCCTCTCCACGCCGCCGGAGGCCGCTCACTCTTCCGTCGCCGCCGCCGTCGCCGAAGATCCCTCGGAGGCGGCTCCTCCTCCGCGCCCCCGCGTCTTGCCGGATTCCCTCCAGTACCCGCCCGGCTTCGTCGGCGCGATTCCCGCCCGCTCCCGCTCCGACGGTGGCGGCGGCGGGATTGATGCCATGACTTATTTGACGAACATTCTCTCTTCGAAGGTGTATGACGTGGCGATTGAGTCTCCTCTGCAATTGGCGCCAAAGCTCTCTGCGAGACTCGGGGTTAAGGTTTGGCTCAAGAGAGAGGATTTGCAACCTGTTTTCTCATTTAAGCTTCGTGGAGCTTATAATATGATGGCAAAGCTTCCGAGGGAATTGTTGGAAAGGGGGGTTATATGCTCGTCTGCTGGCAATCATGCTCAAGGAGTTGCATTGGCTGCCAAGAGGTTGAATTGCAGTGCGGTGATTGCTATGCCTGTCACCACTCCGGAAATCAAGTGGAAATCCGTGGAGGCGCTGGGTGCTACAGTTGTGCTCGTGGGGGATTCATATGATGAAGCACAAGCGTATGCTAAGAAGCGGGGGGTAGAGGAGGGTAGGACATTCGTACCTCCTTTTGATCATCCTGATGTCATCATGGGTCAGGGAACAGTTGGGATGGAAATTGTCCGCCAAATGCAGGGTCCAATTTTTGCAATCTTTGTGCCTGTGGGAGGAGGTGGTCTCATTGCTGGTATTGCTGCTTATGTGAAGAGGGTTAATCCGGAGGTGAAGATTTTTGGGGTGGAACCCACTGATGCGAATGCAATGGCATTGTCACTCCATCATGATCAGAGAGTGATTTTGGATCAGGTTGGAGGATTTGCAGATGGTGTAGCTGTTAAAGAGGTTGGTGAAGAAACTTTTCGCATATGCAAGGAGTTGATAGATGGCGTTGTTCTTGTAAGCCGTGATTCAATTTGTGCGTCAATAAAAGATATGTTCGAGGAGAAAAGGAACATATTAGAACCAGCAGGTGCACTTGCACTAGCTGGAGCTGAGGCATACTGCAAGCATCATGGGGTCCAGGGGAAAGATATTGTAGTAATAACCAGTGGAGCAAACATGAATTTTGATAAACTTCGGGTTGTAACTGAACTCGCTAACGTTGGCCGTAAACAAGAGGCTGTGCTGGCAACTGTTTTGCCAGAGGAGCCGGGCAGTTTCAAACAGTTTTGTGAATTGGTGGGGCAGATGAACATCACAGAATTCAAATACAGATATAACTCCAATGAGAAGGCTGTTGTCCTTTACAGTGTTGGGATTCACACAGTCTCCGAATTAAGAGCAATGCAGGAGAGGATGGAATCTTCTCAGCTCAAAACTTACAATCTCACAGAAAGTGACTTGGTGAAAGACCACTTGCGTTACTTGATGGGAGGCCGATCAAACATTCAGAATGAGGTTCTCTGTCGTTTCACCTTTCCAGAAAGACCTGGTGCTTTGATGAAATTTTTGGACCCCTTCAGTCCACGTTGGAATATCAGTTTATTCCATTACCGAGGGGAGGGTGAAACTGGAGCAAATGTGCTAGTTGGAATACAGGTACCCAAAAGTGAGATGGATGAGTTCCACGATCGTGCCAACAAACTTGGATATGATTATAAAGTGGTGAATAATGATGATGACTTCCAGCTTCTAATGCACTGA
>Glyma.10g064000.1.p sequence-type=predicted peptide transcript=Glyma.10g064000.1 locus=Glyma.10g064000 ID=Glyma.10g064000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEALRVAPTTPPLLRRHHPLRQMARHPLTARPRRAPLIAATLSTPPEAAHSSVAAAVAEDPSEAAPPPRPRVLPDSLQYPPGFVGAIPARSRSDGGGGGIDAMTYLTNILSSKVYDVAIESPLQLAPKLSARLGVKVWLKREDLQPVFSFKLRGAYNMMAKLPRELLERGVICSSAGNHAQGVALAAKRLNCSAVIAMPVTTPEIKWKSVEALGATVVLVGDSYDEAQAYAKKRGVEEGRTFVPPFDHPDVIMGQGTVGMEIVRQMQGPIFAIFVPVGGGGLIAGIAAYVKRVNPEVKIFGVEPTDANAMALSLHHDQRVILDQVGGFADGVAVKEVGEETFRICKELIDGVVLVSRDSICASIKDMFEEKRNILEPAGALALAGAEAYCKHHGVQGKDIVVITSGANMNFDKLRVVTELANVGRKQEAVLATVLPEEPGSFKQFCELVGQMNITEFKYRYNSNEKAVVLYSVGIHTVSELRAMQERMESSQLKTYNLTESDLVKDHLRYLMGGRSNIQNEVLCRFTFPERPGALMKFLDPFSPRWNISLFHYRGEGETGANVLVGIQVPKSEMDEFHDRANKLGYDYKVVNNDDDFQLLMH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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