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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G11880.1 | AT | Pyridoxal-dependent decarboxylase family protein | JGI | N/A | IEA |
| GO:0009089 | GO-bp | lysine biosynthetic process via diaminopimelate | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0008836 | GO-mf | diaminopimelate decarboxylase activity | EnsemblGenomes | N/A | IEA |
| KOG0622 | KOG | Ornithine decarboxylase | JGI | N/A | IEA |
| PTHR11482 | Panther | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE | JGI | N/A | IEA |
| PTHR11482:SF5 | Panther | GROUP IV DECARBOXYLASE | JGI | N/A | IEA |
| PF00278 | PFAM | Pyridoxal-dependent decarboxylase, C-terminal sheet domain | JGI | N/A | IEA |
| PF02784 | PFAM | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | JGI | N/A | IEA |
| PWY-5097 | SoyCyc9 | L-lysine biosynthesis VI | Plant Metabolic Network | ISS | |
| PWY-724 | SoyCyc9 | superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | Plant Metabolic Network | ISS | |
| GN7V-48527 | SoyCyc9-rxn | diaminopimelate decarboxylase | Plant Metabolic Network | ISS |
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Glyma.10g053600 not represented in the dataset |
Glyma.10g053600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g140700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g06090 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g053600.1 sequence-type=CDS polypeptide=Glyma.10g053600.1.p locus=Glyma.10g053600 ID=Glyma.10g053600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGCCTCGCACGTCCTTTATAATCCTCCTTCCCTTTCCAAAACTTTTATTAATCACTCTTTGAACCAAAACCCTTTCCCTCAAAACCTAATTCTACCACTAAAAGCTACTATTAAACCGCGGGTTCTTAGAGTGGTTCACTCCCAGAAGATCATTGCTAACCCCTCACTTCATGACTCCGATACCAAGACTCATTTTCGGCACTATTTCACCAAGAGTGAAGATGGGTTTTTGTATTGTGAGGGCCTTAAAGTGCATGAAATTATGGATTCTGTTGAAAGAACACATTTCTACTTGTCCAGTAAGCCTGAGATTACTAGAAATGTGGAAGCTTATAAGGACGCCTTGGAGTGTTTGAGGTCTATAATTGGTTATGCCATCAAGGCTGTTATGAAAATTCTGGAGCATTTGAGGCAGTTGGGCTGTGGTGCTGTGCTTGTTAGTGGGAATGAGTTTAGTTTGGCTCTTCATGCTGGGTTTGATCCCACAAGGTGTATCTTTAATGGCAATGGGAAAATTTTGGATGATTTGGTCTTGGCTGCCAAAGAAGGTGTTTTTGTCAACATTGATAGTGAATTTGACTTGGAAAACATCGGAATAAGAACTCCAAAATTTGGCATAAGAAATGAGAAGCTGCAATGGTTTCTAGATGCTGTGAAGGAGCATCCTAATGAGTTAAAGCTTGTAGGGGCCCACTGCCATCTTGGGTCAACAATTACCAAGGTTGACATTTTCAGGGATGCTGCCATTATTATGGTCAACTACATCGACCAAATCCAAGCTCAGGGTTTTCAAGTTGATTACTTAAATATTGGTGGTGGACTTGGGATAGATTATCAACATTCCGGTGCTGTCCTTCCTACACCCAGAGATCTCATTGACATTCATAGTATTCCTGCTAATTTAATATTTTATGCCTGTGGAACATTTAGATCACTCATTGCAAACATTTGTTGCTTAGTTAACCGGGTGACAGGTGTCAAAACCAATGGATCTAAAAACTTTATTGTGATTGATGGAAGCATGGCTGAACTTATCCATCCTAACATATATCATATAATGTTTTTCATTGAAGTTTGGGGGTCTGGTCCTCCCTCCTTCTTGAACTATCATATCGAACTGGTTTCCCCTGCCCCAGCAGATGCTGAGATAGCAAAGTTTGATGTTCTTGGTCCTGTCTGTGAGTCTGCAGATTTCTTTGGAAAAGATAGACAACTTCCAACTCCAGCCAAGTTTCACTTTGCATGGTACTCTTGTCTGGTCGTTCATGATGCTGGTGCTTATTGTATGAGTATGGCATCAACCTACAATTTAAAGATGCGGCCTCCTGAGTATTGGGTAAGCAAAATCAGACACGGGGAGACATTTGAAGACCACATGCGGTCCTTTGAGGGCCTTTGA
>Glyma.10g053600.1.p sequence-type=predicted peptide transcript=Glyma.10g053600.1 locus=Glyma.10g053600 ID=Glyma.10g053600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASHVLYNPPSLSKTFINHSLNQNPFPQNLILPLKATIKPRVLRVVHSQKIIANPSLHDSDTKTHFRHYFTKSEDGFLYCEGLKVHEIMDSVERTHFYLSSKPEITRNVEAYKDALECLRSIIGYAIKAVMKILEHLRQLGCGAVLVSGNEFSLALHAGFDPTRCIFNGNGKILDDLVLAAKEGVFVNIDSEFDLENIGIRTPKFGIRNEKLQWFLDAVKEHPNELKLVGAHCHLGSTITKVDIFRDAAIIMVNYIDQIQAQGFQVDYLNIGGGLGIDYQHSGAVLPTPRDLIDIHSIPANLIFYACGTFRSLIANICCLVNRVTGVKTNGSKNFIVIDGSMAELIHPNIYHIMFFIEVWGSGPPSFLNYHIELVSPAPADAEIAKFDVLGPVCESADFFGKDRQLPTPAKFHFAWYSCLVVHDAGAYCMSMASTYNLKMRPPEYWVSKIRHGETFEDHMRSFEGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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