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Report for Sequence Feature Glyma.10g052000

Feature Type:gene_model
Chromosome:Gm10
Start:4667734
stop:4671934
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g052000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09770.1AT RING/U-box superfamily protein JGI N/AIEA
KOG4265 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR22996Panther MAHOGUNIN JGI N/AIEA

Expression Patterns of Glyma.10g052000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g052000
ParalogEvidenceComments
Glyma.13g139400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g052000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g05930 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g052000
>Glyma.10g052000.1 sequence-type=CDS polypeptide=Glyma.10g052000.1.p locus=Glyma.10g052000 ID=Glyma.10g052000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTAACATAGGAAGCAGCGGCTCCAACAGCCGCTGGAGACACGGCGGAGGCGGTGGCAGCGGGAGGCGGATTCACCCGCCGCCTCCGCCGGTGATGTCGCCGCCGGAGGTAACGGCGAACCGATTCGTGTACCCTCCGGCCGCCACGCCGTATCACAACTACCCCGGGTACTACCCGCCGCCGACCACCATGCCGGCGCCGTTGCCGGCGCCATACGACCACCACCACCGTCCGGCGGTGGACCCGATGTGGGTGAGGTATCCGCCGGCGGCACCGCCGGCACCGGCGCCGTACGTGGAGCACCAGAAGGCGGTTACGATTAAGAACGATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCTGTTTTCTCGTGTCGTTTACGTTTGATGCCACCGTTTCGGGAAGCATCACCATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCACCCTAACCCCAATGAAGGAAAATGTTCTTCCACCCGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCTGGAACCGGTATTGATTTTTCAACATTTGAGGAGTCTGAGTTATTGAAAGCAGGGGACATGGATGTCTATCCTGTTGCAATTAAAGCAGACGCATCCTCCGGCGACCATGATGAATCAAAATCAAATGAAACTCCTGCATCCGGTAGCTCAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAGTTCCAGGTGAAGGTTGTTAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTTCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGGGAATGACCCGGGAAAAGAGTGTGTTATATGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGTTGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTCGAGAGGCTTTTGGAGATCAAAGTTGGACCCGAGCTTGAGGAGTGA
Predicted protein sequences of Glyma.10g052000
>Glyma.10g052000.1.p sequence-type=predicted peptide transcript=Glyma.10g052000.1 locus=Glyma.10g052000 ID=Glyma.10g052000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNIGSSGSNSRWRHGGGGGSGRRIHPPPPPVMSPPEVTANRFVYPPAATPYHNYPGYYPPPTTMPAPLPAPYDHHHRPAVDPMWVRYPPAAPPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENPGCFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFKQPAGTGIDFSTFEESELLKAGDMDVYPVAIKADASSGDHDESKSNETPASGSSNSQITQAVFEKEKGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPELEE*






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