Glyma.10g049900

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Report for Sequence Feature Glyma.10g049900

Feature Type:	gene_model
Chromosome:	Gm10
Start:	4488532
stop:	4492690
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g049900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35795.1	AT	Chaperone DnaJ-domain superfamily protein	JGI	N/A	IEA
KOG0723	KOG	Molecular chaperone (DnaJ superfamily)	JGI	N/A	IEA
PTHR12763	Panther	UNCHARACTERIZED	JGI	N/A	IEA
PTHR12763:SF4	Panther		JGI	N/A	IEA
PF00226	PFAM	DnaJ domain	JGI	N/A	IEA

Expression Patterns of Glyma.10g049900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g049900 not represented in the dataset	Glyma.10g049900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.10g049900

Paralog	Evidence	Comments
Glyma.13g137400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g049900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g05710	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.10g049900

Limit To All Plant Sequences

>Glyma.10g049900.2 sequence-type=transcript locus=Glyma.10g049900 ID=Glyma.10g049900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAGCAAAAAAATCTATCAGAAGAATTGGACTAGAAGTTACGAGAAAAATCAGTTGTGCAGAGCAAGGCAATTAAAAAGGAAAAAGGAAAATAAATATAAATATAAAAAAAAAAGAAGCCAAGCTTCGTTCATGTTCCTCAACTGAAACCCTCTTTGCGGGCAAATCAAAACCCTATTCGAATTCTCCATTCACTCGTTTAAGCTTTTTAACGTTATGGCTACACCATTGGTGGCAGGGATTGCAGTGGCGGCTGCGGCTTATGCTGGTAGATATGGTATCCAGGCTTGGCAAGCATTCAAGGCTAGGCCACCGAGTATGCGAAAATTTTATGAAGGTGGTTTCCCGGCTACCATGACTAGGAGGGAAGCAGCTCTTATACTGGGTGTTAGGGAACGCACTCCAACAGATAAGATTAAAGAAGCACATAGGAGGGTGATGGTTGCAAACCATCCAGATGCAGGTGGCAGCCATTACCTTGCATCCAAAATTAATGAGGCAAAAGATATGTTAATTGGAAAGACCAAAGGTGGTGGGTCAGCATTTTGAAGCCTGCTCAAGCCTTTCTTTCCATCATTTTGACAGTGCAGACCGGGGTCCTCATTAGATGTCAATTATTAATTTTTTGGTCATCGCCTAATTAATTCTTGTAGTCCCATTGTGAGAAAGTTGAACATGGGTATGCTTGTATCAGGATGATAAAGCTCCATTGTAACTTGGCATGTGCTATAGAAGTTAAGATTGCTATCAATAAAATTGATTTTTACTCGCGCATTTTACTA

Coding sequences of Glyma.10g049900

Limit To All Plant Sequences

>Glyma.10g049900.1 sequence-type=CDS polypeptide=Glyma.10g049900.1.p locus=Glyma.10g049900 ID=Glyma.10g049900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGGAACAGGCTACACCATTGGTGGCAGGGATTGCAGTGGCGGCTGCGGCTTATGCTGGTAGATATGGTATCCAGGCTTGGCAAGCATTCAAGGCTAGGCCACCGAGTATGCGAAAATTTTATGAAGGTGGTTTCCCGGCTACCATGACTAGGAGGGAAGCAGCTCTTATACTGGGTGTTAGGGAACGCACTCCAACAGATAAGATTAAAGAAGCACATAGGAGGGTGATGGTTGCAAACCATCCAGATGCAGGTGGCAGCCATTACCTTGCATCCAAAATTAATGAGGCAAAAGATATGTTAATTGGAAAGACCAAAGGTGGTGGGTCAGCATTTTGA

>Glyma.10g049900.2 sequence-type=CDS polypeptide=Glyma.10g049900.2.p locus=Glyma.10g049900 ID=Glyma.10g049900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACACCATTGGTGGCAGGGATTGCAGTGGCGGCTGCGGCTTATGCTGGTAGATATGGTATCCAGGCTTGGCAAGCATTCAAGGCTAGGCCACCGAGTATGCGAAAATTTTATGAAGGTGGTTTCCCGGCTACCATGACTAGGAGGGAAGCAGCTCTTATACTGGGTGTTAGGGAACGCACTCCAACAGATAAGATTAAAGAAGCACATAGGAGGGTGATGGTTGCAAACCATCCAGATGCAGGTGGCAGCCATTACCTTGCATCCAAAATTAATGAGGCAAAAGATATGTTAATTGGAAAGACCAAAGGTGGTGGGTCAGCATTTTGA

Predicted protein sequences of Glyma.10g049900

Limit To All Plant Sequences

>Glyma.10g049900.1.p sequence-type=predicted peptide transcript=Glyma.10g049900.1 locus=Glyma.10g049900 ID=Glyma.10g049900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLEQATPLVAGIAVAAAAYAGRYGIQAWQAFKARPPSMRKFYEGGFPATMTRREAALILGVRERTPTDKIKEAHRRVMVANHPDAGGSHYLASKINEAKDMLIGKTKGGGSAF*

>Glyma.10g049900.2.p sequence-type=predicted peptide transcript=Glyma.10g049900.2 locus=Glyma.10g049900 ID=Glyma.10g049900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATPLVAGIAVAAAAYAGRYGIQAWQAFKARPPSMRKFYEGGFPATMTRREAALILGVRERTPTDKIKEAHRRVMVANHPDAGGSHYLASKINEAKDMLIGKTKGGGSAF*

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