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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G04540.1 | AT | Beta-ketoacyl synthase | JGI | N/A | IEA |
| GO:0006633 | GO-bp | fatty acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016747 | GO-mf | transferase activity, transferring acyl groups other than amino-acyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016747 | GO-mf | transferase activity, transferring acyl groups other than amino-acyl groups | JGI | N/A | IEA |
| KOG1394 | KOG | 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) | JGI | N/A | IEA |
| PTHR11712 | Panther | POLYKETIDE SYNTHASE-RELATED | JGI | N/A | IEA |
| PF00109 | PFAM | Beta-ketoacyl synthase, N-terminal domain | JGI | N/A | IEA |
| PF02801 | PFAM | Beta-ketoacyl synthase, C-terminal domain | JGI | N/A | IEA |
| PWY-6799 | SoyCyc9 | fatty acid biosynthesis (plant mitochondria) | Plant Metabolic Network | ISS | |
| GN7V-53574 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.10g041100 not represented in the dataset |
Glyma.10g041100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g128000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g04680 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g041100.1 sequence-type=CDS polypeptide=Glyma.10g041100.1.p locus=Glyma.10g041100 ID=Glyma.10g041100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCAACAATGCGCGCCAGAAAACTCTTCAATTCCTTTTACCGAACCATTTCCTCTTCAACTTTCCCACCTCCTCCCGTTGTTTCTTCCCGAAGAGTAGTTGTCACTGGGTTAGGCATGGTGACGCCACTTGGTTGTGGAGTGGACACAACCTGGAAGCGCCTCGTCGATGGGGAATGTGGGGTGAGGGCTTTGTCTCTGGAAGACCTCAAGATGAATTCTTTTGACAAGGAAACTCAGTTGAGTACGTTTGATCAGTTGACATCCAAGGTTGCTGCTCTTGTTCCTACAGGAACCCATCTCGGCGAATTCGACGACCAAATCTGGCTTAATTCTAAGGACCATCGATCAATAGCAAGGTTTATAGCATATGCACTATGTGCTGTTGATGAAGCTCTCAAGGATTCTAATTGGTTTCCCATTGAACAAGAAGATAAGGAAAGAACGGGGGTGTCTATTGGTGGGGGAACTGGAAGCGTTAGTGACATCTTAGATTCTGCACAACTGATCTGTGAGAAGCGCCTTCGTCGCCTTAGTCCATTTTTTATCCCGCGGATATTGATCAACATGGCATCAGGTCATGTGAGCATAAAATATGGGTTCCAGGGACCAAATCATGCTGCAGTCACTGCCTGTGCCACTGGTTCACATTCTATTGGTGATGCAATGAGAATGATTCAATTTGGGGATGCAGATGTTATGGTAGCTGGAGGCACAGAGTCCAGCATTGATGCATTATCAATTGCAGGATTCTGCAGGTCTCGAGCTTTGACAACAAAATATAATTCAAGCCCACAGGAAGCATCACGGCCATTTGATAGTGGTCGAGATGGGTTTGTGATAGGTGAAGGTTCTGGAGTCTTGGTCTTGGAGGAATTTGAGCATGCAAAAAACCGAGGAGCCAAAATCTATGCAGAGGTCCGTGGCTATGGGATGTCAGGTGATGCATATCATATTACTCAACCTCCTAGTGATGGGAGAGGAGCCATTTTGGCCATGACTCGTGCTTTAAGACAGTCAGGTTTTCATCCTTCTGAAGTGGATTACATAAATGCACATGCTACATCTACACCTTTGGGCGATGCAATAGAAGCTAATGCTATCAAAACCATGTTCTCTGACCGTGCAAGCTCGTCTGCTTTAGCCCTCTCCTCCACAAAGGGTGCTATTGGTCATCTCCTAGGCGCTGCTGGAGCTGTTGAAGCAATTTTTGCAGTTTTGGCAATACGGCATGGTATTGCTCCATTAACTCTTAATTTAACTAAGCCAGATCCTGTGTTCGGTGATGGTTTCATGCCATTGTCTGCTTCAGAAGAAATGCCAATTAGAGTTGCCATGTCAAACTCTTTTGGTTTCGGAGGCACAAATGCGTCCCTACTTTTTGCTCAAACAGGTTCGGACTGA
>Glyma.10g041100.1.p sequence-type=predicted peptide transcript=Glyma.10g041100.1 locus=Glyma.10g041100 ID=Glyma.10g041100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPTMRARKLFNSFYRTISSSTFPPPPVVSSRRVVVTGLGMVTPLGCGVDTTWKRLVDGECGVRALSLEDLKMNSFDKETQLSTFDQLTSKVAALVPTGTHLGEFDDQIWLNSKDHRSIARFIAYALCAVDEALKDSNWFPIEQEDKERTGVSIGGGTGSVSDILDSAQLICEKRLRRLSPFFIPRILINMASGHVSIKYGFQGPNHAAVTACATGSHSIGDAMRMIQFGDADVMVAGGTESSIDALSIAGFCRSRALTTKYNSSPQEASRPFDSGRDGFVIGEGSGVLVLEEFEHAKNRGAKIYAEVRGYGMSGDAYHITQPPSDGRGAILAMTRALRQSGFHPSEVDYINAHATSTPLGDAIEANAIKTMFSDRASSSALALSSTKGAIGHLLGAAGAVEAIFAVLAIRHGIAPLTLNLTKPDPVFGDGFMPLSASEEMPIRVAMSNSFGFGGTNASLLFAQTGSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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