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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20420.1 | AT | ATP citrate lyase (ACL) family protein | JGI | N/A | IEA |
| GO:0006099 | GO-bp | tricarboxylic acid cycle | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004775 | GO-mf | succinate-CoA ligase (ADP-forming) activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG2799 | KOG | Succinyl-CoA synthetase, beta subunit | JGI | N/A | IEA |
| PTHR11815 | Panther | SUCCINYL-COA SYNTHETASE BETA CHAIN | JGI | N/A | IEA |
| PF00549 | PFAM | CoA-ligase | JGI | N/A | IEA |
| PF08442 | PFAM | ATP-grasp domain | JGI | N/A | IEA |
| PWY-5464 | SoyCyc9 | superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | Plant Metabolic Network | ISS | |
| PWY-5690 | SoyCyc9 | TCA cycle II (plants and fungi) | Plant Metabolic Network | ISS | |
| GN7V-46353 | SoyCyc9-rxn | succinate-CoA ligase (ADP-forming) | Plant Metabolic Network | ISS |
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Glyma.10g039000 not represented in the dataset |
Glyma.10g039000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g125400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g04480 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g039000.1 sequence-type=CDS polypeptide=Glyma.10g039000.1.p locus=Glyma.10g039000 ID=Glyma.10g039000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGAGAGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCGGTCGCCGGAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTGTTTCCTCTGTTGAAGAGGCCAGAAAGGTCATCAAGGACCTTTTCCCTAATGAAAATGAGTTGGTGGTTAAGAGTCAAATTTTAGCCGGCGGACGAGGTTTGGGAACTTTCAAAAGCGGCCTTAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAACACTGGATCGTACGAGTGCTGGTCCAATTATAATTGCTTGTAGTAAGGGAGGAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAGGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTGTTGATGGTTTGGCTCTCAAAGTGGCTGATAGAAATAAGTCGATTGAACAAGTGAAGAATTTGTATAAACTTTTTGTTGATTGTGACTGCACTCTTTTGGAAATCAATCCCATAGCGGAGACAGCTGATAACCAATTGGTGGCTGCTGATGCTAAGTTGAATTTTGATGATAATGCTGCATATCGCCAGAAAGAGATATTTTCTCTCCGTGATACAACACAAGAGGACCCTCGAGAGGTGACTGCTGCAAAGGCAGATTTAAATTATATTGGGTTAGATGGAGAAATTGGCTGCATGGTGAATGGAGCAGGGTTAGCAATGGCCACAATGGATATAATTAAATTGCATGGGGGTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATTTTGGTTAACATTTTTGGTGGTATAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGGTTGCACTGAAAGTACCAGTTGTAGTTCGTCTGGAAGGCACCAATGTTGATCAAGGAAAAAGAATATTGAAGGAAAGTGGTATGGCATTAATAACGGCTGAAGATTTAGATGATGCAGCTCAGAAAGCAGTGAAAGCTGCTTACAAATGA
>Glyma.10g039000.1.p sequence-type=predicted peptide transcript=Glyma.10g039000.1 locus=Glyma.10g039000 ID=Glyma.10g039000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVRGLLNKLVSRSLSVAGKWQHNQLRRLNIHEYQGAELMSKHGVNVPRGVAVSSVEEARKVIKDLFPNENELVVKSQILAGGRGLGTFKSGLKGGVHIVKTDQVEDIAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAITLDRTSAGPIIIACSKGGTSIEDLAEKFPDMIIKVPVDVFEGITDEGAAKVVDGLALKVADRNKSIEQVKNLYKLFVDCDCTLLEINPIAETADNQLVAADAKLNFDDNAAYRQKEIFSLRDTTQEDPREVTAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASENQVVEAFKILTADDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVRLEGTNVDQGKRILKESGMALITAEDLDDAAQKAVKAAYK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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