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Report for Sequence Feature Glyma.10g038700

Feature Type:gene_model
Chromosome:Gm10
Start:3434415
stop:3440719
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g038700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G20440.1AT Ypt/Rab-GAP domain of gyp1p superfamily protein JGI N/AIEA
AT4G28550.1AT Ypt/Rab-GAP domain of gyp1p superfamily protein JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0031338GO-bp regulation of vesicle fusion EnsemblGenomesN/AIEA
GO:0090630GO-bp activation of GTPase activity EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0012505GO-cc endomembrane system EnsemblGenomesN/AIEA
GO:0005096GO-mf GTPase activator activity EnsemblGenomesN/AIEA
GO:0017137GO-mf Rab GTPase binding EnsemblGenomesN/AIEA
KOG2197 KOG Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins JGI N/AIEA
KOG4567 KOG GTPase-activating protein JGI N/AIEA
PTHR22957Panther TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN JGI N/AIEA
PTHR22957:SF30Panther JGI N/AIEA
PF00566PFAM Rab-GTPase-TBC domain JGI N/AIEA

Expression Patterns of Glyma.10g038700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g038700
ParalogEvidenceComments
Glyma.13g125100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g038700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g04440 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g038700
>Glyma.10g038700.2 sequence-type=transcript locus=Glyma.10g038700 ID=Glyma.10g038700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTAAGATCATCTTTCTCTTATTCTATTGATGGTGTGATGAGTCTCAACTCTCTAGTAAGGAGCTTGTTGGATTGAAAAAGGAACTTGTGTGGGTTAGCAGATGGTTGGTTGTGAGGGACTGTGGGGGGTTCTTATGAAGAGTTCTGGAACTACTGAGTTGAATACCTTTTACCCCATTAAAGCAGAATGCCAAGCTGATGTTCCAGCCACTCGATTTAAACCAAGGGCTGGCAAAACTCTAAGTCAAAGAAGATGGCAGGCATCATTCTCCCAAGATGGTCACTTGGATATTGCAAAAGTGCTAAGACGAATACAGAGAGGGGGTGTCCATCCTTCAATCAAGGGGGAAGTGTGGGAGTTCTTGCTAGGTTGCTATGATCCTAACAGTACACTTGAAGAACGGAATGAGCTCAAGCAACGCAGGAGGGGGCAGTATGATATGTGGAAAGCTGAATGTCAAAAGATGGTCCCAGTCATTGGTAGTGGAAAATTTATTACAACACCCCTCATTGATGATGAAGGCCAGCCAATAGATCCTTCTATGGTAGGCGTCCAGACTTCAGATAAGAAAGTTGTGCAGTGGATGCAATTATTACATCAGATTGGTCTGGATGTTCATCGAACAGATCGAGCACTTGAATTTTATGAGACTGAAGCTAATCAAGCAAAACTCTTCGATGTTCTAGCAGTTTATGCTTGGTTGGACAATGATATTGGTTATGTACAAGGAATGAATGATATTTGCTCACCTTTGATTATTCTTGTTGAGAATGAAGCAGATTGCTACTGGTGCTTTGACCGTGCAATGCGAAGGATGAGAGAGAACTTCAGGTGCAGTGCAAGTTCAATGGGTGTCCAATCTCAGTTGGCTACACTCTCACAGATAATGAAAACAGTTGATCCAAAGCTTCATCATCACCTTGAGGATTTAGATGGAGGAGAATATCTCTTTGCATTTCGCATGCTTATGGTTCTTTTCCGAAGAGAATTTTCTTTTGCAGATACTTTGTATCTTTGGGAGGTAAGGACGATTCCTATGACGATTTAATTTTTCTCAGGAAATGCATATTTAAAAGTTGAGGACCTCAGCTACCGTTTTCTGATTCCTCAACATTCCTTGATGAGATAGAGTATTTCACATTAATAGCTCATTTTAAGACATAATATAGATTGTTTCCAGTTGATGTGGGCCATGGAATACAACCCATACATCTTCACAAAATATGAGGATCCAGATCATGCAAAAACAAAAGGCCCCTTGCCTCCAACAAACGACAAACATTTGAAGCAATATGGAAAATTTGAGAGAAAAAATGTGAAGACTGGGCATACAGAGGAAAATAGTGCACTGTCTGTTTTTCTTGTTGCAAGTGTTCTTGAGATCAAGAATAGGCGGATTTTAAATGAGGCCAAGGGCGTGGACGATGTTGTCAAGATCTTGGGAGACATAACCTCAAATCTTGATGCTAAAAAAGCACTTAATGAAGCACTGAAAATTCAGAAAAAATACCTAAGCAAGGCCAAGAAGGGATGACAAAGACAACAATAGATTTTCTGTAACTACATGATGGCAGCTGTGTTTGCATGATCTTCTGAGGTTTCAGTTGCTCTTGACAGACCATTGTtttctttctttcattctttttttTTAGTCTCTTAGTGATGGCAAGCAGTCCCTGCTCTGCCTGTGTTGAAAATCAAATTATAATCTTATACATGAAAAAAAAAAATACTTCGTTATTGATGTCTGGAGATCTAGAGAACCAGAATACGTCAGCTTTCATATTGTAGAATTATTTTATAGGTAAGAAAGATCTTCTCTTCCTCAATGAGGGACATTTATGCTATCAAATCAAAACTGATAAAATTGTAAAGTATTTTTTTAACCGAAGGACAGTTAATGATTCA

>Glyma.10g038700.3 sequence-type=transcript locus=Glyma.10g038700 ID=Glyma.10g038700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTAAGATCATCTTTCTCTTATTCTATTGATGGTGTGATGAGTCTCAACTCTCTAGTAAGGAGCTTGTTGGATTGAAAAAGGAACTTGTGTGGGTTAGCAGATGGTTGGTTGTGAGGGACTGTGGGGGGTTCTTATGAAGAGTTCTGGAACTACTGAGTTGAATACCTTTTACCCCATTAAAGCAGAATGCCAAGCTGATGTTCCAGCCACTCGATTTAAACCAAGGGCTGGCAAAACTCTAAGTCAAAGAAGATGGCAGGCATCATTCTCCCAAGATGGTCACTTGGATATTGCAAAAGTGCTAAGACGAATACAGAGAGGGGGTGTCCATCCTTCAATCAAGGGGGAAGTGTGGGAGTTCTTGCTAGGTTGCTATGATCCTAACAGTACACTTGAAGAACGGAATGAGCTCAAGCAACGCAGGAGGGGGCAGTATGATATGTGGAAAGCTGAATGTCAAAAGATGGTCCCAGTCATTGGTAGTGGAAAATTTATTACAACACCCCTCATTGATGATGAAGGCCAGCCAATAGATCCTTCTATGGTAGGCGTCCAGACTTCAGATAAGAAAGTTGTGCAGTGGATGCAATTATTACATCAGATTGGTCTGGATGTTCATCGAACAGATCGAGCACTTGAATTTTATGAGACTGAAGCTAATCAAGCAAAACTCTTCGATGTTCTAGCAGTTTATGCTTGGTTGGACAATGATATTGGTTATGTACAAGGAATGAATGATATTTGCTCACCTTTGATTATTCTTGTTGAGAATGAAGCAGATTGCTACTGGTGCTTTGACCGTGCAATGCGAAGGATGAGAGAGAACTTCAGGTGCAGTGCAAGTTCAATGGGTGTCCAATCTCAGTTGGCTACACTCTCACAGATAATGAAAACAGTTGATCCAAAGCTTCATCATCACCTTGAGGATTTAGATGGAGGAGAATATCTCTTTGCATTTCGCATGCTTATGGTTCTTTTCCGAAGAGAATTTTCTTTTGCAGATACTTTGTATCTTTGGGAGTTGATGTGGGCCATGGAATACAACCCATACATCTTCACAAAATATGAGGATCCAGATCATGCAAAAACAAAAGGCCCCTTGCCTCCAACAAACGACAAACATTTGAAGCAATATGGAAAATTTGAGAGAAAAAATGTGAAGACTGGGCATACAGAGGAAAATAGTGCACTGTCTGTTTTTCTTGTTGCAAGTGTTCTTGAGATCAAGAATAGGCGGATTTTAAATGAGGCCAAGGGCGTGGACGATGTTGTCAAGATCTTGGGAGACATAACCTCAAATCTTGATGCTAAAAAAGCACTTAATGAAGCACTGAAAATTCAGAAAAAATACCTAAGCAAGGCCAAGAAGGGATGACAAAGACAACAATAGATTTTCTGTAACTACATGATGGCAGCTGTGTTTGCATGATCTTCTGAGGTTTCAGTTGCTCTTGACAGACCATTGTtttctttctttcattctttttttTTAGTCTCTTAGTGATGGCAAGCAGTCCCTGCTCTGCCTGTGTTGAAAATCAAATTATAATCTTATACATGAAAAAAAAAAATACTTCGTTATTGATGTCTGGAGATCTAGAGAACCAGAATACGTCAGCTTTCATATTGTAGAATTATTTTATAGGTAAGAAAGATCTTCTCTTCCTCAATGAGGGACATTTATGCTATCAAATCAAAACTGATAAAATTGTAAAGTATTTTTTTAACCGAAGGACAGTTAATGATTCA
Coding sequences of Glyma.10g038700
>Glyma.10g038700.1 sequence-type=CDS polypeptide=Glyma.10g038700.1.p locus=Glyma.10g038700 ID=Glyma.10g038700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGGTTGTGAGGGACTGTGGGGGGTTCTTATGAAGAGTTCTGGAACTACTGAGTTGAATACCTTTTACCCCATTAAAGCAGAATGCCAAGCTGATGTTCCAGCCACTCGATTTAAACCAAGGGCTGGCAAAACTCTAAGTCAAAGAAGATGGCAGGCATCATTCTCCCAAGATGGTCACTTGGATATTGCAAAAGTGCTAAGACGAATACAGAGAGGGGGTGTCCATCCTTCAATCAAGGGGGAAGTGTGGGAGTTCTTGCTAGGTTGCTATGATCCTAACAGTACACTTGAAGAACGGAATGAGCTCAAGCAACGCAGGAGGGGGCAGTATGATATGTGGAAAGCTGAATGTCAAAAGATGGTCCCAGTCATTGGTAGTGGAAAATTTATTACAACACCCCTCATTGATGATGAAGGCCAGCCAATAGATCCTTCTATGGTAGGCGTCCAGACTTCAGATAAGAAAGTTGTGCAGTGGATGCAATTATTACATCAGATTGGTCTGGATGTTCATCGAACAGATCGAGCACTTGAATTTTATGAGACTGAAGCTAATCAAGCAAAACTCTTCGATGTTCTAGCAGTTTATGCTTGGTTGGACAATGATATTGGTTATGTACAAGGAATGAATGATATTTGCTCACCTTTGATTATTCTTGTTGAGAATGAAGCAGATTGCTACTGGTGCTTTGACCGTGCAATGCGAAGGATGAGAGAGAACTTCAGGTGCAGTGCAAGTTCAATGGGTGTCCAATCTCAGTTGGCTACACTCTCACAGATAATGAAAACAGTTGATCCAAAGCTTCATCATCACCTTGAGGATTTAGATGGAGGAGAATATCTCTTTGCATTTCGCATGCTTATGGTTCTTTTCCGAAGAGAATTTTCTTTTGCAGATACTTTGTATCTTTGGGAGTTGATGTGGGCCATGGAATACAACCCATACATCTTCACAAAATATGAGGATCCAGATCATGCAAAAACAAAAGGCCCCTTGCCTCCAACAAACGACAAACATTTGAAGCAATATGGAAAATTTGAGAGAAAAAATGTGAAGACTGGGCATACAGAGGAAAATAGTGCACTGTCTGTTTTTCTTGTTGCAAGTGTTCTTGAGATCAAGAATAGGCGGATTTTAAATGAGGCCAAGGGCGTGGACGATGTTGTCAAGATCTTGGGAGACATAACCTCAAATCTTGATGCTAAAAAAGCACTTAATGAAGCACTGAAAATTCAGAAAAAATACCTAAGCAAGGCCAAGAAGGGATGA

>Glyma.10g038700.2 sequence-type=CDS polypeptide=Glyma.10g038700.2.p locus=Glyma.10g038700 ID=Glyma.10g038700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGGTTGTGAGGGACTGTGGGGGGTTCTTATGAAGAGTTCTGGAACTACTGAGTTGAATACCTTTTACCCCATTAAAGCAGAATGCCAAGCTGATGTTCCAGCCACTCGATTTAAACCAAGGGCTGGCAAAACTCTAAGTCAAAGAAGATGGCAGGCATCATTCTCCCAAGATGGTCACTTGGATATTGCAAAAGTGCTAAGACGAATACAGAGAGGGGGTGTCCATCCTTCAATCAAGGGGGAAGTGTGGGAGTTCTTGCTAGGTTGCTATGATCCTAACAGTACACTTGAAGAACGGAATGAGCTCAAGCAACGCAGGAGGGGGCAGTATGATATGTGGAAAGCTGAATGTCAAAAGATGGTCCCAGTCATTGGTAGTGGAAAATTTATTACAACACCCCTCATTGATGATGAAGGCCAGCCAATAGATCCTTCTATGGTAGGCGTCCAGACTTCAGATAAGAAAGTTGTGCAGTGGATGCAATTATTACATCAGATTGGTCTGGATGTTCATCGAACAGATCGAGCACTTGAATTTTATGAGACTGAAGCTAATCAAGCAAAACTCTTCGATGTTCTAGCAGTTTATGCTTGGTTGGACAATGATATTGGTTATGTACAAGGAATGAATGATATTTGCTCACCTTTGATTATTCTTGTTGAGAATGAAGCAGATTGCTACTGGTGCTTTGACCGTGCAATGCGAAGGATGAGAGAGAACTTCAGGTGCAGTGCAAGTTCAATGGGTGTCCAATCTCAGTTGGCTACACTCTCACAGATAATGAAAACAGTTGATCCAAAGCTTCATCATCACCTTGAGGATTTAGATGGAGGAGAATATCTCTTTGCATTTCGCATGCTTATGGTTCTTTTCCGAAGAGAATTTTCTTTTGCAGATACTTTGTATCTTTGGGAGGTAAGGACGATTCCTATGACGATTTAA

>Glyma.10g038700.3 sequence-type=CDS polypeptide=Glyma.10g038700.3.p locus=Glyma.10g038700 ID=Glyma.10g038700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGGTTGTGAGGGACTGTGGGGGGTTCTTATGAAGAGTTCTGGAACTACTGAGTTGAATACCTTTTACCCCATTAAAGCAGAATGCCAAGCTGATGTTCCAGCCACTCGATTTAAACCAAGGGCTGGCAAAACTCTAAGTCAAAGAAGATGGCAGGCATCATTCTCCCAAGATGGTCACTTGGATATTGCAAAAGTGCTAAGACGAATACAGAGAGGGGGTGTCCATCCTTCAATCAAGGGGGAAGTGTGGGAGTTCTTGCTAGGTTGCTATGATCCTAACAGTACACTTGAAGAACGGAATGAGCTCAAGCAACGCAGGAGGGGGCAGTATGATATGTGGAAAGCTGAATGTCAAAAGATGGTCCCAGTCATTGGTAGTGGAAAATTTATTACAACACCCCTCATTGATGATGAAGGCCAGCCAATAGATCCTTCTATGGTAGGCGTCCAGACTTCAGATAAGAAAGTTGTGCAGTGGATGCAATTATTACATCAGATTGGTCTGGATGTTCATCGAACAGATCGAGCACTTGAATTTTATGAGACTGAAGCTAATCAAGCAAAACTCTTCGATGTTCTAGCAGTTTATGCTTGGTTGGACAATGATATTGGTTATGTACAAGGAATGAATGATATTTGCTCACCTTTGATTATTCTTGTTGAGAATGAAGCAGATTGCTACTGGTGCTTTGACCGTGCAATGCGAAGGATGAGAGAGAACTTCAGGTGCAGTGCAAGTTCAATGGGTGTCCAATCTCAGTTGGCTACACTCTCACAGATAATGAAAACAGTTGATCCAAAGCTTCATCATCACCTTGAGGATTTAGATGGAGGAGAATATCTCTTTGCATTTCGCATGCTTATGGTTCTTTTCCGAAGAGAATTTTCTTTTGCAGATACTTTGTATCTTTGGGAGTTGATGTGGGCCATGGAATACAACCCATACATCTTCACAAAATATGAGGATCCAGATCATGCAAAAACAAAAGGCCCCTTGCCTCCAACAAACGACAAACATTTGAAGCAATATGGAAAATTTGAGAGAAAAAATGTGAAGACTGGGCATACAGAGGAAAATAGTGCACTGTCTGTTTTTCTTGTTGCAAGTGTTCTTGAGATCAAGAATAGGCGGATTTTAAATGAGGCCAAGGGCGTGGACGATGTTGTCAAGATCTTGGGAGACATAACCTCAAATCTTGATGCTAAAAAAGCACTTAATGAAGCACTGAAAATTCAGAAAAAATACCTAAGCAAGGCCAAGAAGGGATGA
Predicted protein sequences of Glyma.10g038700
>Glyma.10g038700.1.p sequence-type=predicted peptide transcript=Glyma.10g038700.1 locus=Glyma.10g038700 ID=Glyma.10g038700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVGCEGLWGVLMKSSGTTELNTFYPIKAECQADVPATRFKPRAGKTLSQRRWQASFSQDGHLDIAKVLRRIQRGGVHPSIKGEVWEFLLGCYDPNSTLEERNELKQRRRGQYDMWKAECQKMVPVIGSGKFITTPLIDDEGQPIDPSMVGVQTSDKKVVQWMQLLHQIGLDVHRTDRALEFYETEANQAKLFDVLAVYAWLDNDIGYVQGMNDICSPLIILVENEADCYWCFDRAMRRMRENFRCSASSMGVQSQLATLSQIMKTVDPKLHHHLEDLDGGEYLFAFRMLMVLFRREFSFADTLYLWELMWAMEYNPYIFTKYEDPDHAKTKGPLPPTNDKHLKQYGKFERKNVKTGHTEENSALSVFLVASVLEIKNRRILNEAKGVDDVVKILGDITSNLDAKKALNEALKIQKKYLSKAKKG*

>Glyma.10g038700.2.p sequence-type=predicted peptide transcript=Glyma.10g038700.2 locus=Glyma.10g038700 ID=Glyma.10g038700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVGCEGLWGVLMKSSGTTELNTFYPIKAECQADVPATRFKPRAGKTLSQRRWQASFSQDGHLDIAKVLRRIQRGGVHPSIKGEVWEFLLGCYDPNSTLEERNELKQRRRGQYDMWKAECQKMVPVIGSGKFITTPLIDDEGQPIDPSMVGVQTSDKKVVQWMQLLHQIGLDVHRTDRALEFYETEANQAKLFDVLAVYAWLDNDIGYVQGMNDICSPLIILVENEADCYWCFDRAMRRMRENFRCSASSMGVQSQLATLSQIMKTVDPKLHHHLEDLDGGEYLFAFRMLMVLFRREFSFADTLYLWEVRTIPMTI*

>Glyma.10g038700.3.p sequence-type=predicted peptide transcript=Glyma.10g038700.3 locus=Glyma.10g038700 ID=Glyma.10g038700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVGCEGLWGVLMKSSGTTELNTFYPIKAECQADVPATRFKPRAGKTLSQRRWQASFSQDGHLDIAKVLRRIQRGGVHPSIKGEVWEFLLGCYDPNSTLEERNELKQRRRGQYDMWKAECQKMVPVIGSGKFITTPLIDDEGQPIDPSMVGVQTSDKKVVQWMQLLHQIGLDVHRTDRALEFYETEANQAKLFDVLAVYAWLDNDIGYVQGMNDICSPLIILVENEADCYWCFDRAMRRMRENFRCSASSMGVQSQLATLSQIMKTVDPKLHHHLEDLDGGEYLFAFRMLMVLFRREFSFADTLYLWELMWAMEYNPYIFTKYEDPDHAKTKGPLPPTNDKHLKQYGKFERKNVKTGHTEENSALSVFLVASVLEIKNRRILNEAKGVDDVVKILGDITSNLDAKKALNEALKIQKKYLSKAKKG*






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