Glyma.10g038000

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Report for Sequence Feature Glyma.10g038000

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3378472
stop:	3385913
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g038000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21150.1	AT	ribophorin II (RPN2) family protein	JGI	N/A	IEA
GO:0006487	GO-bp	protein N-linked glycosylation	EnsemblGenomes	N/A	IEA
GO:0006487	GO-bp	protein N-linked glycosylation	JGI	N/A	IEA
GO:0008250	GO-cc	oligosaccharyltransferase complex	EnsemblGenomes	N/A	IEA
GO:0008250	GO-cc	oligosaccharyltransferase complex	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
GO:0004579	GO-mf	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	EnsemblGenomes	N/A	IEA
KOG2447	KOG	Oligosaccharyltransferase, delta subunit (ribophorin II)	JGI	N/A	IEA
PTHR12640	Panther	RIBOPHORIN II	JGI	N/A	IEA
PF05817	PFAM	Oligosaccharyltransferase subunit Ribophorin II	JGI	N/A	IEA
GN7V-67502	SoyCyc9-rxn	Dolichyl-diphosphooligosaccharide--protein glycotransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.10g038000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g038000 not represented in the dataset	Glyma.10g038000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.10g038000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g04380	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.10g038000

Limit To All Plant Sequences

>Glyma.10g038000.2 sequence-type=transcript locus=Glyma.10g038000 ID=Glyma.10g038000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGGTATTATTAACTCCTTACATTAACATTAGAGAAAGTCTTCTCCCTTTTCAAGTGTGGCCACTCTCTCTTTCTCCGATTCATTGCCGCTCCACCAGCAATGGCCACGCACGTGAGTCACGTGATAGTAGCGGCAGCATTTcttctacttcttctccctttctctttctccttctccatctccCATTCTCACCGATCCGCTGCAATCAACCTCTTCGCTGCCACTCCCACAAGCTTAGAAGACGCGTACGAGGCGCTTAGAGTTTTTCAGATTCTCGGAATCGAAGAGAAGAATACTCCTGTGAACGAGGACACGTGTCAGAAAGTAGTTGAAAGTCTAGCCTCGTCTTCTCCTCTCAAGGATTTGTTCTATGCCTTGAAAGTTAACGCCATTTTAAAATGCAATGTCAATGGGAACGTTTTTAAGGATATTGCTTCAAGACTTAAAGCCACTGTTCATGATGCGAGTGCTTTGCTTGACATCTACTATTCAATTGGAGGTTTGGTTGTTATAAAGGATCAGGATTCTAATGTTGATGTGCTTCTTGCTGATGTTGATGGGGTTTTCCAATCAATCAAGGTTCTCAGTCAAAGTGACGGAAGATGGCGCTATAGTTCTGATAATCCAGAGTCTAGTACCTATGCTGCTGGATTAGCTCTTGAATCCCTTGCTGGATTGATCTCACTAGCTTCTTCTGAATTTGATCAATCTAAGGTCAACGTAGTGAAAAATGGCATAGTAAAGCTTTTTGATGGCATTGAGAAATATGAGGATGGAACCTTTTATTTTGATGAGAAATATGTTGGTGGACATGAGCAACGGGGTTCTCTTTCCACAACTTCTTCAGTTGTTAGAGGGGTTACTGCATTTGCTGCTGTAACTTCTGGAAAAATAAATCTTCCAGGGGATAAAATATTGGGTCTGGCAAAATTTTTCTTGGGCATTGGAATCCCTGGAGATGCCAAGGACTTCTTCAATCAAGTTGAGTCATTAGCTTTTCTAGAGAGCAACAGGATTTCCATTCCATTGATATTGTCACTCCCAGAAACAGCTTATTCATTGACCAAGAAAGGCCAGCTTAAGGTCAAGGTGAATACAGTGCTTGGTTCAGCTGCACCACCGTTAACAGTGAAGCTTGTCCGTGCTTTTAGCACAGGTGCAAAAGATTCAGCTATTATTGACAGCAAGGAGCTCCGGTATGACCAAGAAAGTGGATTTCATGTCTTGGATGCTTTGCCGAAGAATGTGGATGTGGGGACATATGTGTTTGTTTTTGAGATTGTGCTTCATGATTTTGGCAGTGAAAAAGTTTATGCAACTGGAGGCCAAATTCATGTACCAATATATGTCACTGGAATTATTGAAGTTGGTAATGCAGAAATCACAGTTCTTGACAGTGATCTTGGAAGTGCTGAAACCCAGAAAAAGCTAGATTTGGCTGGAAATGATGCCGTTTCACTCTCAGCTAACCACCTGCAGAAGTTGAGGTTTTCTTTCCAATTGACAACTCCTCATGGTCATGTTTTTAAGCCTCATCAGGCGTTTTTCAAGTTGAGACATGAGACAAAGGTTGAACACATCTTTGTGGTTGGAAATACCGGCAAGAAGTTTGAGAAAGTTCTCGTTAAGTATCTCTTGTTACATATTATTTCATTGTCTGGGTTTTGAAGTTTATCCTTGAGTACTTGTTCAGTTTGTTACATTGTATGATAAATAACTATTATACAGCTGAATCCTCACAATTCATTATAGTGTGTATATCATCCAATATAAAAATCAAGAGACAAGACCATCATTAACGTATTGCAACTTTAATCACTTGTAAGGCAACTGCAAGTTTTTTTTTAATCTTTAATTGGAACTATTGAGCTTGGCTGTGATACAATTGCTTATCATTTTTTGTTTTGCCCTTTTATATTGGGGGAATGCTGCAACATTATTTTGATTCTCA

Coding sequences of Glyma.10g038000

Limit To All Plant Sequences

>Glyma.10g038000.1 sequence-type=CDS polypeptide=Glyma.10g038000.1.p locus=Glyma.10g038000 ID=Glyma.10g038000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACGCACGTGAGTCACGTGATAGTAGCGGCAGCATTTCTTCTACTTCTTCTCCCTTTCTCTTTCTCCTTCTCCATCTCCCATTCTCACCGATCCGCTGCAATCAACCTCTTCGCTGCCACTCCCACAAGCTTAGAAGACGCGTACGAGGCGCTTAGAGTTTTTCAGATTCTCGGAATCGAAGAGAAGAATACTCCTGTGAACGAGGACACGTGTCAGAAAGTAGTTGAAAGTCTAGCCTCGTCTTCTCCTCTCAAGGATTTGTTCTATGCCTTGAAAGTTAACGCCATTTTAAAATGCAATGTCAATGGGAACGTTTTTAAGGATATTGCTTCAAGACTTAAAGCCACTGTTCATGATGCGAGTGCTTTGCTTGACATCTACTATTCAATTGGAGGTTTGGTTGTTATAAAGGATCAGGATTCTAATGTTGATGTGCTTCTTGCTGATGTTGATGGGGTTTTCCAATCAATCAAGGTTCTCAGTCAAAGTGACGGAAGATGGCGCTATAGTTCTGATAATCCAGAGTCTAGTACCTATGCTGCTGGATTAGCTCTTGAATCCCTTGCTGGATTGATCTCACTAGCTTCTTCTGAATTTGATCAATCTAAGGTCAACGTAGTGAAAAATGGCATAGTAAAGCTTTTTGATGGCATTGAGAAATATGAGGATGGAACCTTTTATTTTGATGAGAAATATGTTGGTGGACATGAGCAACGGGGTTCTCTTTCCACAACTTCTTCAGTTGTTAGAGGGGTTACTGCATTTGCTGCTGTAACTTCTGGAAAAATAAATCTTCCAGGGGATAAAATATTGGGTCTGGCAAAATTTTTCTTGGGCATTGGAATCCCTGGAGATGCCAAGGACTTCTTCAATCAAGTTGAGTCATTAGCTTTTCTAGAGAGCAACAGGATTTCCATTCCATTGATATTGTCACTCCCAGAAACAGCTTATTCATTGACCAAGAAAGGCCAGCTTAAGGTCAAGGTGAATACAGTGCTTGGTTCAGCTGCACCACCGTTAACAGTGAAGCTTGTCCGTGCTTTTAGCACAGGTGCAAAAGATTCAGCTATTATTGACAGCAAGGAGCTCCGGTATGACCAAGAAAGTGGATTTCATGTCTTGGATGCTTTGCCGAAGAATGTGGATGTGGGGACATATGTGTTTGTTTTTGAGATTGTGCTTCATGATTTTGGCAGTGAAAAAGTTTATGCAACTGGAGGCCAAATTCATGTACCAATATATGTCACTGGAATTATTGAAGTTGGTAATGCAGAAATCACAGTTCTTGACAGTGATCTTGGAAGTGCTGAAACCCAGAAAAAGCTAGATTTGGCTGGAAATGATGCCGTTTCACTCTCAGCTAACCACCTGCAGAAGTTGAGGTTTTCTTTCCAATTGACAACTCCTCATGGTCATGTTTTTAAGCCTCATCAGGCGTTTTTCAAGTTGAGACATGAGACAAAGGTTGAACACATCTTTGTGGTTGGAAATACCGGCAAGAAGTTTGAGAAAGTTCTCGATTTTCTTGGCTTGGTGGAGAAACTTTTCTATCTCTCGGGAAAATATGAAATTGAGCTGACTGTTGGTGATGCTGTCATGGAGAACTCTTTCTTACGGCTACTTGGCCATGTTGAATTAGATCTTCCAGAAGCACCTGAGAAAGCACCCCGTCCTCCACCACCACCTGTTGATCCTTACTCAAGATATGGGCCCAAAGCAGAGATTACCCATATATTCAGGTCTCCTGAAAAGAGACCTCACCAGGAACTCTCTCTTGCTTTCTTGGGTTTGATCCTTTTGCCATTCATTGGCTTTTTGGTTGGGTTATTGCGCTTGGGGGTGAACCTAAAGAATTTCCCTGGTTCAACAGTACCTGCCACATTTGGGATCCTTTTCCATGTTGGTATTGCGGCGGTTTTGTTACTTTATGTACTTTTCTGGTTGAAGCTGGACCTGTTCACTACACTCAAAGCATTTGGTCTTTTGGGAGCTATACTGATGTTTGTGGGGCACAGAATTCTTTCTCATCTCGCTTTTACATCTGCCAAGTTGAAATCTGCATGA

>Glyma.10g038000.2 sequence-type=CDS polypeptide=Glyma.10g038000.2.p locus=Glyma.10g038000 ID=Glyma.10g038000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACGCACGTGAGTCACGTGATAGTAGCGGCAGCATTTCTTCTACTTCTTCTCCCTTTCTCTTTCTCCTTCTCCATCTCCCATTCTCACCGATCCGCTGCAATCAACCTCTTCGCTGCCACTCCCACAAGCTTAGAAGACGCGTACGAGGCGCTTAGAGTTTTTCAGATTCTCGGAATCGAAGAGAAGAATACTCCTGTGAACGAGGACACGTGTCAGAAAGTAGTTGAAAGTCTAGCCTCGTCTTCTCCTCTCAAGGATTTGTTCTATGCCTTGAAAGTTAACGCCATTTTAAAATGCAATGTCAATGGGAACGTTTTTAAGGATATTGCTTCAAGACTTAAAGCCACTGTTCATGATGCGAGTGCTTTGCTTGACATCTACTATTCAATTGGAGGTTTGGTTGTTATAAAGGATCAGGATTCTAATGTTGATGTGCTTCTTGCTGATGTTGATGGGGTTTTCCAATCAATCAAGGTTCTCAGTCAAAGTGACGGAAGATGGCGCTATAGTTCTGATAATCCAGAGTCTAGTACCTATGCTGCTGGATTAGCTCTTGAATCCCTTGCTGGATTGATCTCACTAGCTTCTTCTGAATTTGATCAATCTAAGGTCAACGTAGTGAAAAATGGCATAGTAAAGCTTTTTGATGGCATTGAGAAATATGAGGATGGAACCTTTTATTTTGATGAGAAATATGTTGGTGGACATGAGCAACGGGGTTCTCTTTCCACAACTTCTTCAGTTGTTAGAGGGGTTACTGCATTTGCTGCTGTAACTTCTGGAAAAATAAATCTTCCAGGGGATAAAATATTGGGTCTGGCAAAATTTTTCTTGGGCATTGGAATCCCTGGAGATGCCAAGGACTTCTTCAATCAAGTTGAGTCATTAGCTTTTCTAGAGAGCAACAGGATTTCCATTCCATTGATATTGTCACTCCCAGAAACAGCTTATTCATTGACCAAGAAAGGCCAGCTTAAGGTCAAGGTGAATACAGTGCTTGGTTCAGCTGCACCACCGTTAACAGTGAAGCTTGTCCGTGCTTTTAGCACAGGTGCAAAAGATTCAGCTATTATTGACAGCAAGGAGCTCCGGTATGACCAAGAAAGTGGATTTCATGTCTTGGATGCTTTGCCGAAGAATGTGGATGTGGGGACATATGTGTTTGTTTTTGAGATTGTGCTTCATGATTTTGGCAGTGAAAAAGTTTATGCAACTGGAGGCCAAATTCATGTACCAATATATGTCACTGGAATTATTGAAGTTGGTAATGCAGAAATCACAGTTCTTGACAGTGATCTTGGAAGTGCTGAAACCCAGAAAAAGCTAGATTTGGCTGGAAATGATGCCGTTTCACTCTCAGCTAACCACCTGCAGAAGTTGAGGTTTTCTTTCCAATTGACAACTCCTCATGGTCATGTTTTTAAGCCTCATCAGGCGTTTTTCAAGTTGAGACATGAGACAAAGGTTGAACACATCTTTGTGGTTGGAAATACCGGCAAGAAGTTTGAGAAAGTTCTCGTTAAGTATCTCTTGTTACATATTATTTCATTGTCTGGGTTTTGA

Predicted protein sequences of Glyma.10g038000

Limit To All Plant Sequences

>Glyma.10g038000.1.p sequence-type=predicted peptide transcript=Glyma.10g038000.1 locus=Glyma.10g038000 ID=Glyma.10g038000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATHVSHVIVAAAFLLLLLPFSFSFSISHSHRSAAINLFAATPTSLEDAYEALRVFQILGIEEKNTPVNEDTCQKVVESLASSSPLKDLFYALKVNAILKCNVNGNVFKDIASRLKATVHDASALLDIYYSIGGLVVIKDQDSNVDVLLADVDGVFQSIKVLSQSDGRWRYSSDNPESSTYAAGLALESLAGLISLASSEFDQSKVNVVKNGIVKLFDGIEKYEDGTFYFDEKYVGGHEQRGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLAKFFLGIGIPGDAKDFFNQVESLAFLESNRISIPLILSLPETAYSLTKKGQLKVKVNTVLGSAAPPLTVKLVRAFSTGAKDSAIIDSKELRYDQESGFHVLDALPKNVDVGTYVFVFEIVLHDFGSEKVYATGGQIHVPIYVTGIIEVGNAEITVLDSDLGSAETQKKLDLAGNDAVSLSANHLQKLRFSFQLTTPHGHVFKPHQAFFKLRHETKVEHIFVVGNTGKKFEKVLDFLGLVEKLFYLSGKYEIELTVGDAVMENSFLRLLGHVELDLPEAPEKAPRPPPPPVDPYSRYGPKAEITHIFRSPEKRPHQELSLAFLGLILLPFIGFLVGLLRLGVNLKNFPGSTVPATFGILFHVGIAAVLLLYVLFWLKLDLFTTLKAFGLLGAILMFVGHRILSHLAFTSAKLKSA*

>Glyma.10g038000.2.p sequence-type=predicted peptide transcript=Glyma.10g038000.2 locus=Glyma.10g038000 ID=Glyma.10g038000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATHVSHVIVAAAFLLLLLPFSFSFSISHSHRSAAINLFAATPTSLEDAYEALRVFQILGIEEKNTPVNEDTCQKVVESLASSSPLKDLFYALKVNAILKCNVNGNVFKDIASRLKATVHDASALLDIYYSIGGLVVIKDQDSNVDVLLADVDGVFQSIKVLSQSDGRWRYSSDNPESSTYAAGLALESLAGLISLASSEFDQSKVNVVKNGIVKLFDGIEKYEDGTFYFDEKYVGGHEQRGSLSTTSSVVRGVTAFAAVTSGKINLPGDKILGLAKFFLGIGIPGDAKDFFNQVESLAFLESNRISIPLILSLPETAYSLTKKGQLKVKVNTVLGSAAPPLTVKLVRAFSTGAKDSAIIDSKELRYDQESGFHVLDALPKNVDVGTYVFVFEIVLHDFGSEKVYATGGQIHVPIYVTGIIEVGNAEITVLDSDLGSAETQKKLDLAGNDAVSLSANHLQKLRFSFQLTTPHGHVFKPHQAFFKLRHETKVEHIFVVGNTGKKFEKVLVKYLLLHIISLSGF*

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