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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54670.3 | AT | Structural maintenance of chromosomes (SMC) family protein | JGI | N/A | IEA |
| GO:0007064 | GO-bp | mitotic sister chromatid cohesion | EnsemblGenomes | N/A | IEA |
| GO:0051276 | GO-bp | chromosome organization | EnsemblGenomes | N/A | IEA |
| GO:0051276 | GO-bp | chromosome organization | JGI | N/A | IEA |
| GO:0005694 | GO-cc | chromosome | EnsemblGenomes | N/A | IEA |
| GO:0005694 | GO-cc | chromosome | JGI | N/A | IEA |
| GO:0008278 | GO-cc | cohesin complex | EnsemblGenomes | N/A | IEA |
| GO:0003682 | GO-mf | chromatin binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0046982 | GO-mf | protein heterodimerization activity | EnsemblGenomes | N/A | IEA |
| KOG0018 | KOG | Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) | JGI | N/A | IEA |
| PTHR18937 | Panther | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | JGI | N/A | IEA |
| PTHR18937:SF12 | Panther | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN | JGI | N/A | IEA |
| PF02463 | PFAM | RecF/RecN/SMC N terminal domain | JGI | N/A | IEA |
| PF06470 | PFAM | SMC proteins Flexible Hinge Domain | JGI | N/A | IEA |
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Glyma.10g037300 not represented in the dataset |
Glyma.10g037300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g123700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g04300 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g037300.1 sequence-type=CDS polypeptide=Glyma.10g037300.1.p locus=Glyma.10g037300 ID=Glyma.10g037300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCGTCGCTACTCTCCCCGGGCAAAATCCACTGCCTCGAGGTGGAGAATTTCAAGTCCTACAAGGGCTTCCAAGTGATCGGTCCCTTCTACGACTTCACCGCCATCATCGGCCCCAACGGCGCCGGCAAGTCCAATCTCATGGACGCCATCAGCTTCGTCCTCGGCGTCCGCACTGGCCAGCTCCGCGGCGCGCAGCTCAAGGACCTCATCTACGCCTTCGACGACCGCGAGAAGGAGCAGAAAGGCCGCAGAGCCTTCGTCCGCCTCGTCTACCACCTCGCCAACTCCACCGAGATCAAGTTCACCCGCACCATCACCAGCGCCGGCGCCAGCGAGTACCGCATCGACGAATCCCTCGTCAATTGGGAGACCTACAACAACAGACTCAAGTCCCTAGGCATTCTCGTCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTGGAGTCTATTGCATCGAAGAATCCCAAAGAGCTCACTGCACTGGTGGAGCAGATATCCGGCTCTGATGAGTGCAAGAGGGACTATGAGCAGTTTGAGGAGGAGAAAGGTGCTGCTGAGGAAAAATCAGCGCTTGTTTATCAGAAAAAGAAGACAGTGGTTATGGAGAGAAAACAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATCTCCGCCTGCAACAAGAACTGGATGGCACTTCTATTAACTATAAAAACTTCGTACCCCATTGCCCAGAGGCTCTTCGCTATGCGAAGAAATCTATGAAGGGAGAACATTTCTTGTGGAAGTTGTTTAATATACACAACGATTATGCTGAAACAATTAAGGATCTTGAAGATGAGGAAAAAAGCCGTGAAGGTGTTGTTAAAGAGCTAGAATACTTTGAAAGTGAAGCTAGTAAAAAGAAAAAAGAGCAGGCTAAATATCTGAAAGAGATTGCACTACGTGAAAAGAGAATTGCTGAGAAAGGCAACAAGCTTGACAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATAACTTCAAAAATTAAAAAAGGGAAGAAAGAGCTTGATAAAAAAAAGGTTGAACGGAAGAAGCATGATGCTGATATAGCATTACTACAGAATGACATCCAGGATCTTACAGCAAAAATGGCAGACCTTCAGGAAAAGGGACGAGATGTTGATGACGAGCTTGATTTGCAAGGCAATGACTTGGAAGAATATTTTCGCATCAAAGAGGAAGCTGGAATGAAAACTGCAAAGCTTAGAGAGGAAAAGGAGCTTCTAGATAGGAAACTTAACGCTGATAGTGAAGCTCAAAAGAACTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCGCAGGAAGAACAGATGCGAGCAAGGCTTGAAAAAATTCTTGATAATTCTGCAAAAAATAAAGTTGGCCTTGAAAACTTGAAAAAAGAACTACGCGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAATTAGAAAATCAACTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGTTAGGTTGTCTCAGGCTGTTGAGACTCTAAAACGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGACCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTCGTAGTTGATAATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTACGGGGTACAGCAAAACTGATTTTTGACTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTAGTTTGTGATGATCTTGAGGAGGCCAAAATTTTAAGCTGGAGCGGTGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTCTGTTGACAAAATCTGGCACAATGACTGGGGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAATCAGAATTGGAAGAGCTAGGATCAATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAAAGACCATCAAAGAAAGAATTGAATGCATCAGTCCAGACCTGCAGAAGTTAAATGATGCTGTTAACAAGAGCAATGCAGATGTACGTAAGCTTGAGAAGAGGATAAATGAAATTACTGACAGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTTGCAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGCTGCTCAAAGTATAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGATTTGGAATCTTCTCTTGGTGCTTTAGAGAAAGATTTAAAACGTGTACATGACAGAGAGGCTGCAGCGAAGTTAGCAGCTGAGAATGCTACGGAAGAGATTAATCAACTTAAGGAAGAAGCTAAAGAGTGGAAATCAAAGTCAGAAGATTGTGAAAAGGAAATCCAAGAGTGGAAGAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAGGAGGCACAGATTGATCAGTTGAATGTGCAAAAGCAGGAAATATTAGAAAAATGTGAACTAGAACAGATTAGCCTCCCGATCATACTGGATCCTATGGATACTGATAGCTCAGTACCAGGTCCATCTTTTGACTTTGATCAACTAAATAGGGCACTGAAAGATAGGAGACACTCAGACAGGGATAAAATTGAGGTAGAGTTTAAGCAAAAAATTGATGCCTTGATATCTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAAGCTCTGCTAGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGGTACCACTTGTTCATGGATGCTTTTACCCATATATCTGCGCTTCCGTGA
>Glyma.10g037300.1.p sequence-type=predicted peptide transcript=Glyma.10g037300.1 locus=Glyma.10g037300 ID=Glyma.10g037300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPSLLSPGKIHCLEVENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYHLANSTEIKFTRTITSAGASEYRIDESLVNWETYNNRLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQFEEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQQELDGTSINYKNFVPHCPEALRYAKKSMKGEHFLWKLFNIHNDYAETIKDLEDEEKSREGVVKELEYFESEASKKKKEQAKYLKEIALREKRIAEKGNKLDKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERKKHDADIALLQNDIQDLTAKMADLQEKGRDVDDELDLQGNDLEEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQQLRNRESELNSQEEQMRARLEKILDNSAKNKVGLENLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRYENERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVDNEKTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLRGTAKLIFDCKFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSQEKKTIKERIECISPDLQKLNDAVNKSNADVRKLEKRINEITDRIYRDFSKSVGVANIREYEENRLKAAQSIAEERLNLSSQLSKLKYQLEYEQNRDMNSRIQDLESSLGALEKDLKRVHDREAAAKLAAENATEEINQLKEEAKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRLIHSKEAQIDQLNVQKQEILEKCELEQISLPIILDPMDTDSSVPGPSFDFDQLNRALKDRRHSDRDKIEVEFKQKIDALISEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEREKTQRFNEVKQRRYHLFMDAFTHISALP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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