SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63900.1 | AT | E3 Ubiquitin ligase family protein | JGI | N/A | IEA |
| GO:0006996 | GO-bp | organelle organization | EnsemblGenomes | N/A | IEA |
| GO:0007005 | GO-bp | mitochondrion organization | JGI | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein ligase activity | JGI | N/A | IEA |
| KOG1571 | KOG | Predicted E3 ubiquitin ligase | JGI | N/A | IEA |
| PTHR12183 | Panther | UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN | JGI | N/A | IEA |
| PF12483 | PFAM | E3 Ubiquitin ligase | JGI | N/A | IEA |
|
Glyma.10g024100 not represented in the dataset |
Glyma.10g024100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g149800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g02920 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g024100.1 sequence-type=CDS polypeptide=Glyma.10g024100.1.p locus=Glyma.10g024100 ID=Glyma.10g024100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATTCCTTGGGGTGGCCTCAGTTGCTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCGGAAATTCTTAAATCCGTTACAAGGGTCAATCAGCTGAAGGAACTAGCTCAACTGTTAGATGCAGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTTAGCTCTGAAACCCCAATTAACTGCGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCCGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGAGGTGCTTCTGGTTTTGCATTACCTGTTGGAATTGAGGCATTTGAAGAGTCGGGTCGGTCACTTGTACGTGGAACTTTGGATTATCTGCAAGGTCTCAAGATGCTTGGAGTCAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGATGTTGGCGCTATTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTGTGGGCTTGACGGTGTTTGGTGCTTATCTGATAGCCAAGCATGCTATTCGGTACATATTGGAAAGACGGCGCCGCAGCGAACTTCAAAGAAGGGTTCTTGCTGCAGCTGCTAAGAAGTCGGGACAAAATAATGATGTTGAAAAGGCCGACAGCTTATCAGATGGTGCTAAAAAGGATCGCTTAATGCCAGATTTGTGTGTAATATGCCTTGAGCAGGAATATAATGCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGTTCTTCACACTTGACCAATTGTCCTCTCTGCCGGCGACAGATAGAGAAGGTTGTGAAGACTTTCCGTCATTGA
>Glyma.10g024100.1.p sequence-type=predicted peptide transcript=Glyma.10g024100.1 locus=Glyma.10g024100 ID=Glyma.10g024100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLIVTISGRVSSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTDRVHVVGARGASGFALPVGIEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGAIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASVGLTVFGAYLIAKHAIRYILERRRRSELQRRVLAAAAKKSGQNNDVEKADSLSDGAKKDRLMPDLCVICLEQEYNAVFVPCGHMCCCTACSSHLTNCPLCRRQIEKVVKTFRH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
