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Report for Sequence Feature Glyma.10g023600

Feature Type:gene_model
Chromosome:Gm10
Start:2057231
stop:2059841
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g023600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63030.1AT methyl-CPG-binding domain 4 JGI N/AIEA
GO:0009157GO-bp deoxyribonucleoside monophosphate biosynthetic process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0004797GO-mf thymidine kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
PTHR15547Panther JGI N/AIEA
PTHR15547:SF6Panther JGI N/AIEA
PF01429PFAM Methyl-CpG binding domain JGI N/AIEA
PF07496PFAM CW-type Zinc Finger JGI N/AIEA

Expression Patterns of Glyma.10g023600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g023600 not represented in the dataset
Glyma.10g023600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g023600
ParalogEvidenceComments
Glyma.02g150300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g023600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g02860 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g023600
>Glyma.10g023600.2 sequence-type=transcript locus=Glyma.10g023600 ID=Glyma.10g023600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTATGGATGGTGAAATATGGTAGAGAGAAAAGGGAAGTAACTTATGTGAATAATATGAAGGGCGGTCAAGAAATCTCAAAAACACCGTCCTCTTCTAAGGTCAATTGTATTGCAGGTTAATCGTATTATGTTGTCTGTCGTGCAATGGAGAACACTAAGTCAGGGTTCAGTTGATATATATGCTGCTCAGTGCAAAAATTGCTTGAAATGGAGAGAGATTGATACACAGGAAGAGTTTGAAGAGATTAGAAGTAAAGTTGCTGAGGAACCTTTTCTTTGCAGCAGAAAGGCTAATAGTTCCTGTGATGAACCTGGTGATATTAAATATGATTCCTCTCGGACATGGGTGATTGACAAGCCTAACCTCCCAAAGACTCCACAAGGTTTTAAGAGGAGCTTGGTGCTTAGAAAAGATTACTCCAAATTGGACGCTTACTACATCACACCTGCAGGCAAAAAACTGAGAACCCGCAATGAGATTGCTGCGTTTCTAAAAGATAATCCAGAATTCAAAGGTGTGTCTGCTTCAGATTTTGATTTTTCTTCCCCAAAGATAATGCAAGACACCATCCCTGAGGTTGTTGAGCAGAAGGATTCTGCTAACAAGAAAGTTAAGATAGCCAAAGATGAGGTTTGAGAAATATCATCTCTAGTTTGCATGCTGTGAAAGATAGTCATTCTGGTTGGTTTTTTGGATGTTACTTCAGAGACTGTTTTTGCGGTAAAACCAAACATGGCGGCAAACATGGCGGCATCGAAACAAATTTTGTTCTCATGTTTTTGTATTATATTTAAATATGTTATTACCATGTTTAAATGTAATCGCAATTCACGCACCTAAACAGATATTTACTGCGGTTTGTGTGGTTCAAAATTCAAACGTAAACGGAACACCCAAAAAGATATCACTGTTTTTCGATGCACCCT

>Glyma.10g023600.3 sequence-type=transcript locus=Glyma.10g023600 ID=Glyma.10g023600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTGTTTTCAATAATTTTGCAGTTAGGGTTTTCCGTGTACGAGATCCCCTGCTTTTGATTCATTTCTCTTCAGTTTTCATGGATTCACCGAAAATGATTGCTTGTTTCTAGGTCAATTGTATTGCAGGTTAATCGTATTATGTTGTCTGTCGTGCAATGGTGGCAGTCGTCCTGTGTGACATTTTAGAAGGTGGTGTGCTGCTGCTCTGCTGTTGTGCTTATTTGTGGTGGTTCTCGTGTATCTGACATGTCAGAAGATGGTGTGTCCCTTGGCATTGTCATTCCCATCCATGCCTTTTGTCAAAAAGCACTGAGAACACTAAGTCAGGGTTCAGTTGATATATATGCTGCTCAGTGCAAAAATTGCTTGAAATGGAGAGAGATTGATACACAGGAAGAGTTTGAAGAGATTAGAAGTAAAGTTGCTGAGGAACCTTTTCTTTGCAGCAGAAAGGCTAATAGTTCCTGTGATGAACCTGGTGATATTAAATATGATTCCTCTCGGACATGGGTGATTGACAAGCCTAACCTCCCAAAGACTCCACAAGGTTTTAAGAGGAGCTTGGTGCTTAGAAAAGATTACTCCAAATTGGACGCTTACTACATCACACCTGCAGGCAAAAAACTGAGAACCCGCAATGAGATTGCTGCGTTTCTAAAAGATAATCCAGAATTCAAAGGTGTGTCTGCTTCAGATTTTGATTTTTCTTCCCCAAAGATAATGCAAGACACCATCCCTGAGGTTGTTGAGCAGAAGGATTCTGCTAACAAGAAAGTTAAGATAGCCAAAGATGAGGTTTGAGAAATATCATCTCTAGTTTGCATGCTGTGAAAGATAGTCATTCTGGTTGGTTTTTTGGATGTTACTTCAGAGACTGTTTTTGCGGTAAAACCAAACATGGCGGCAAACATGGCGGCATCGAAACAAATTTTGTTCTCATGTTTTTGTATTATATTTAAATATGTTATTACCATGTTTAAATGTAATCGCAATTCACGCACCTAAACAGATATTTACTGCGGTTTGTGTGGTTCAAAATTCAAACGTAAACGGAACACCCAAAAAGATATCACTGTTTTTCGATGCACCCT

>Glyma.10g023600.4 sequence-type=transcript locus=Glyma.10g023600 ID=Glyma.10g023600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TACCACACCTATTTGTACTTGTTCCAAGATGGGCTTCCTCGGCTAGGGTTAGAGGTTGCCTACCCAGAGAATCAAAGTGTGTAATCTCCCTTGCCCCCCTAGACCTAGCATGGATTATATACTAATTTCAAAATATAGAATCTAATCATATCTTATCTTCGTCAATCTCAGAGATAAGCTATGATTAAGCTTAATCCCTTTGATATCTGGGTATAAGTAGGGTGATGATGGTGCAAGGCGGTGTATCTTGTATAGTGGGTCGGGTCGGTTAGTTGACATCCAACCTGATAGGCAAGTTATTGGGTTCGGTATATTGGGCTCTGCCCAATAATGACTAGAGGGTACATAGCCCCCAGCCTCAAGTGTGATAGCGCGTAGAAGCTAAAAAGTAGAAGGGTCTCCAATTTATCATTGGGCTCAGCCCAACGATGACCAGAGGGTACAATACTAATGTTCTCTAGTGAATTCCTGATATGGTAGTGGCAGTCGTCCTGTGTGACATTTTAGAAGGTGGTGTGCTGCTGCTCTGCTGTTGTGCTTATTTGTGGTGGTTCTCGTGTATCTGACATGTCAGAAGATGGTGTGTCCCTTGGCATTGTCATTCCCATCCATGCCTTTTGTCAAAAAGCACTGAGAACACTAAGTCAGGGTTCAGTTGATATATATGCTGCTCAGTGCAAAAATTGCTTGAAATGGAGAGAGATTGATACACAGGAAGAGTTTGAAGAGATTAGAAGTAAAGTTGCTGAGGAACCTTTTCTTTGCAGCAGAAAGGCTAATAGTTCCTGTGATGAACCTGGTGATATTAAATATGATTCCTCTCGGACATGGGTGATTGACAAGCCTAACCTCCCAAAGACTCCACAAGGTTTTAAGAGGAGCTTGGTGCTTAGAAAAGATTACTCCAAATTGGACGCTTACTACATCACACCTGCAGGCAAAAAACTGAGAACCCGCAATGAGATTGCTGCGTTTCTAAAAGATAATCCAGAATTCAAAGGTGTGTCTGCTTCAGATTTTGATTTTTCTTCCCCAAAGATAATGCAAGACACCATCCCTGAGGTTGTTGAGCAGAAGGATTCTGCTAACAAGAAAGTTAAGATAGCCAAAGATGAGGTTTGAGAAATATCATCTCTAGTTTGCATGCTGTGAAAGATAGTCATTCTGGTTGGTTTTTTGGATGTTACTTCAGAGACTGTTTTTGCGGTAAAACCAAACATGGCGGCAAACATGGCGGCATCGAAACAAATTTTGTTCTCATGTTTTTGTATTATATTTAAATATGTTATTACCATGTTTAAATGTAATCGCAATTCACGCACCTAAACAGATATTTACTGCGGTTTGTGTGGTTCAAAATTCAAACGTAAACGGAACACCCAAAAAGATATCACTGTTTTTCGATGCACCCT
Coding sequences of Glyma.10g023600
>Glyma.10g023600.1 sequence-type=CDS polypeptide=Glyma.10g023600.1.p locus=Glyma.10g023600 ID=Glyma.10g023600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAATATGGTAGAGAGAAAAGGGAAGTAACTTATGTGAATAATATGAAGGGCGGTCAAGAAATCTCAAAAACACCGTCCTCTTCTAAGAGAACACTAAGTCAGGGTTCAGTTGATATATATGCTGCTCAGTGCAAAAATTGCTTGAAATGGAGAGAGATTGATACACAGGAAGAGTTTGAAGAGATTAGAAGTAAAGTTGCTGAGGAACCTTTTCTTTGCAGCAGAAAGGCTAATAGTTCCTGTGATGAACCTGGTGATATTAAATATGATTCCTCTCGGACATGGGTGATTGACAAGCCTAACCTCCCAAAGACTCCACAAGGTTTTAAGAGGAGCTTGGTGCTTAGAAAAGATTACTCCAAATTGGACGCTTACTACATCACACCTGCAGGCAAAAAACTGAGAACCCGCAATGAGATTGCTGCGTTTCTAAAAGATAATCCAGAATTCAAAGGTGTGTCTGCTTCAGATTTTGATTTTTCTTCCCCAAAGATAATGCAAGACACCATCCCTGAGGTTGTTGAGCAGAAGGATTCTGCTAACAAGAAAGTTAAGATAGCCAAAGATGAGGTTTGA

>Glyma.10g023600.2 sequence-type=CDS polypeptide=Glyma.10g023600.2.p locus=Glyma.10g023600 ID=Glyma.10g023600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTCTGTCGTGCAATGGAGAACACTAAGTCAGGGTTCAGTTGATATATATGCTGCTCAGTGCAAAAATTGCTTGAAATGGAGAGAGATTGATACACAGGAAGAGTTTGAAGAGATTAGAAGTAAAGTTGCTGAGGAACCTTTTCTTTGCAGCAGAAAGGCTAATAGTTCCTGTGATGAACCTGGTGATATTAAATATGATTCCTCTCGGACATGGGTGATTGACAAGCCTAACCTCCCAAAGACTCCACAAGGTTTTAAGAGGAGCTTGGTGCTTAGAAAAGATTACTCCAAATTGGACGCTTACTACATCACACCTGCAGGCAAAAAACTGAGAACCCGCAATGAGATTGCTGCGTTTCTAAAAGATAATCCAGAATTCAAAGGTGTGTCTGCTTCAGATTTTGATTTTTCTTCCCCAAAGATAATGCAAGACACCATCCCTGAGGTTGTTGAGCAGAAGGATTCTGCTAACAAGAAAGTTAAGATAGCCAAAGATGAGGTTTGA

>Glyma.10g023600.3 sequence-type=CDS polypeptide=Glyma.10g023600.3.p locus=Glyma.10g023600 ID=Glyma.10g023600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGAAGATGGTGTGTCCCTTGGCATTGTCATTCCCATCCATGCCTTTTGTCAAAAAGCACTGAGAACACTAAGTCAGGGTTCAGTTGATATATATGCTGCTCAGTGCAAAAATTGCTTGAAATGGAGAGAGATTGATACACAGGAAGAGTTTGAAGAGATTAGAAGTAAAGTTGCTGAGGAACCTTTTCTTTGCAGCAGAAAGGCTAATAGTTCCTGTGATGAACCTGGTGATATTAAATATGATTCCTCTCGGACATGGGTGATTGACAAGCCTAACCTCCCAAAGACTCCACAAGGTTTTAAGAGGAGCTTGGTGCTTAGAAAAGATTACTCCAAATTGGACGCTTACTACATCACACCTGCAGGCAAAAAACTGAGAACCCGCAATGAGATTGCTGCGTTTCTAAAAGATAATCCAGAATTCAAAGGTGTGTCTGCTTCAGATTTTGATTTTTCTTCCCCAAAGATAATGCAAGACACCATCCCTGAGGTTGTTGAGCAGAAGGATTCTGCTAACAAGAAAGTTAAGATAGCCAAAGATGAGGTTTGA

>Glyma.10g023600.4 sequence-type=CDS polypeptide=Glyma.10g023600.4.p locus=Glyma.10g023600 ID=Glyma.10g023600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGAAGATGGTGTGTCCCTTGGCATTGTCATTCCCATCCATGCCTTTTGTCAAAAAGCACTGAGAACACTAAGTCAGGGTTCAGTTGATATATATGCTGCTCAGTGCAAAAATTGCTTGAAATGGAGAGAGATTGATACACAGGAAGAGTTTGAAGAGATTAGAAGTAAAGTTGCTGAGGAACCTTTTCTTTGCAGCAGAAAGGCTAATAGTTCCTGTGATGAACCTGGTGATATTAAATATGATTCCTCTCGGACATGGGTGATTGACAAGCCTAACCTCCCAAAGACTCCACAAGGTTTTAAGAGGAGCTTGGTGCTTAGAAAAGATTACTCCAAATTGGACGCTTACTACATCACACCTGCAGGCAAAAAACTGAGAACCCGCAATGAGATTGCTGCGTTTCTAAAAGATAATCCAGAATTCAAAGGTGTGTCTGCTTCAGATTTTGATTTTTCTTCCCCAAAGATAATGCAAGACACCATCCCTGAGGTTGTTGAGCAGAAGGATTCTGCTAACAAGAAAGTTAAGATAGCCAAAGATGAGGTTTGA
Predicted protein sequences of Glyma.10g023600
>Glyma.10g023600.1.p sequence-type=predicted peptide transcript=Glyma.10g023600.1 locus=Glyma.10g023600 ID=Glyma.10g023600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKYGREKREVTYVNNMKGGQEISKTPSSSKRTLSQGSVDIYAAQCKNCLKWREIDTQEEFEEIRSKVAEEPFLCSRKANSSCDEPGDIKYDSSRTWVIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPAGKKLRTRNEIAAFLKDNPEFKGVSASDFDFSSPKIMQDTIPEVVEQKDSANKKVKIAKDEV*

>Glyma.10g023600.2.p sequence-type=predicted peptide transcript=Glyma.10g023600.2 locus=Glyma.10g023600 ID=Glyma.10g023600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSVVQWRTLSQGSVDIYAAQCKNCLKWREIDTQEEFEEIRSKVAEEPFLCSRKANSSCDEPGDIKYDSSRTWVIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPAGKKLRTRNEIAAFLKDNPEFKGVSASDFDFSSPKIMQDTIPEVVEQKDSANKKVKIAKDEV*

>Glyma.10g023600.3.p sequence-type=predicted peptide transcript=Glyma.10g023600.3 locus=Glyma.10g023600 ID=Glyma.10g023600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEDGVSLGIVIPIHAFCQKALRTLSQGSVDIYAAQCKNCLKWREIDTQEEFEEIRSKVAEEPFLCSRKANSSCDEPGDIKYDSSRTWVIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPAGKKLRTRNEIAAFLKDNPEFKGVSASDFDFSSPKIMQDTIPEVVEQKDSANKKVKIAKDEV*

>Glyma.10g023600.4.p sequence-type=predicted peptide transcript=Glyma.10g023600.4 locus=Glyma.10g023600 ID=Glyma.10g023600.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEDGVSLGIVIPIHAFCQKALRTLSQGSVDIYAAQCKNCLKWREIDTQEEFEEIRSKVAEEPFLCSRKANSSCDEPGDIKYDSSRTWVIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPAGKKLRTRNEIAAFLKDNPEFKGVSASDFDFSSPKIMQDTIPEVVEQKDSANKKVKIAKDEV*






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