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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G03120.1 | AT | C2H2 and C2HC zinc fingers superfamily protein | JGI | N/A | IEA |
GO:0000387 | GO-bp | spliceosomal snRNP assembly | EnsemblGenomes | N/A | IEA |
GO:0000395 | GO-bp | mRNA 5'-splice site recognition | EnsemblGenomes | N/A | IEA |
GO:0000398 | GO-bp | mRNA splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
GO:0000243 | GO-cc | commitment complex | EnsemblGenomes | N/A | IEA |
GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
GO:0005685 | GO-cc | U1 snRNP | EnsemblGenomes | N/A | IEA |
GO:0071004 | GO-cc | U2-type prespliceosome | EnsemblGenomes | N/A | IEA |
GO:0071010 | GO-cc | prespliceosome | EnsemblGenomes | N/A | IEA |
GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
GO:0003729 | GO-mf | mRNA binding | EnsemblGenomes | N/A | IEA |
GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
GO:0030619 | GO-mf | U1 snRNA binding | EnsemblGenomes | N/A | IEA |
GO:0030627 | GO-mf | pre-mRNA 5'-splice site binding | EnsemblGenomes | N/A | IEA |
GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
KOG3454 | KOG | U1 snRNP-specific protein C | JGI | N/A | IEA |
PF06220 | PFAM | U1 zinc finger | JGI | N/A | IEA |
Glyma.10g021900 not represented in the dataset |
Glyma.10g021900 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.02g152300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma10g02680 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g021900.2 sequence-type=transcript locus=Glyma.10g021900 ID=Glyma.10g021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTTTTACCCAACAAATAGAAATAAAAACAATTTACGATGAAATAAGCCCATAAATAATTAGCTCTGGTAAGTTGTAATGGAATCCAGAAACTTGGGTAGTCTGGGCACAGCAGCGTCCACGCTTTAATCGACGACTAAGTGCTTCTTCTCGTTTTCTTCCCTCGAGTTGTTATCGGTTTTTGGCGGGAGTCGTCGCGGTCGTCATCGTCATTGAATCAGCCATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACTTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCTGCATTTCAGCAAGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAGGCCAACCACTAATGCAAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACATACCATGCCTCCGATGTTACCTCCACCTGGTGCTCCCCAGGTTCCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAACGGTTCCTGGAAGCACTGCTACACCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCTTCATCTGGAAGTTATGATAACTACAATACGAGTGCTCAAGCACCTGAGGGTAATCACTGACCTGGTTGAACTGTTCACTCTGCATAATTCTATCTCCATTGGAGTCTTATGACTAGAGCTATTTGTGCTCTCCCTACCAGCTGTTCATCAAATGAGGACTCTCCATTTGTGATCATATATAGAGTAATCATTGGTATGTAGCATGTCCAGCACTTGAATGCAAGAAATTTTTTATTAGTTATGTTTTTGGTCCTAGATGAAAGATTTATATTGAAGTGCCAATTACTAGAACTTTTTTTACATGACTTGTTCATGATAGGTTCTATTATGCAATTAATTTGTTTTTAATCTGAGTTTTATTAGTGATAAATGTAGTTGTATTGTAGATTTGGGGAAAAAATCATAATTTCATATCATGTATTATTGGATCTGAATTCCCTAAAAGCATTGCATGTTGAATCAACAACATAAAGTGCATTGATGCCTTGATTTCAAATTATGCATTTTGATACT >Glyma.10g021900.3 sequence-type=transcript locus=Glyma.10g021900 ID=Glyma.10g021900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATAAATAATTAGCTCTGGTAAGTTGTAATGGAATCCAGAAACTTGGGTAGTCTGGGCACAGCAGCGTCCACGCTTTAATCGACGACTAAGTGCTTCTTCTCGTTTTCTTCCCTCGAGGTTTTTGGCGGGAGTCGTCGCGGTCGTCATCGTCATTGAATCAGCCATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACTTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCTGCATTTCAGCAAGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAGGCCAACCACTAATGCAAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACATACCATGCCTCCGATGTTACCTCCACCTGGTGCTCCCCAGGTTCCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAACGGTTCCTGGAAGCACTGCTACACCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCTTCATCTGGAAGTTATGATAACTACAATACGAGTGCTCAAGCACCTGAGGGTAATCACTGACCTGGTTGAACTGTTCACTCTGCATAATTCTATCTCCATTGGAGTCTTATGACTAGAGCTATTTGTGCTCTCCCTACCAGCTGTTCATCAAATGAGGACTCTCCATTTGTGATCATATATAGAGTAATCATTGGTATGTAGCATGTCCAGCACTTGAATGCAAGAAATTTTTTATTAGTTATGTTTTTGGTCCTAGATGAAAGATTTATATTGAAGTGCCAATTACTAGAACTTTTTTTACATGACTTGTTCATGATAGGTTCTATTATGCAATTAATTTGTTTTTAATCTGAGTTTTATTAGTGATAAATGTAGTTGTATTGTAGATTTGGGGAAAAAATCATAATTTCATATCATGTATTATTGGATCTGAATTCCCTAAAAGCATTGCATGTTGAATCAACAACATAAAGTGCATTGATGCCTTGATTTCAAATTATGCATTTTGATACT >Glyma.10g021900.4 sequence-type=transcript locus=Glyma.10g021900 ID=Glyma.10g021900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 GGTTTTAACTTTCTTTCAATTTTTataataataataataatTTGCTCCACTGTTAGGGTTTTTGGCGGGAGTCGTCGCGGTCGTCATCGTCATTGAATCAGCCATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACTTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCTGCATTTCAGCAAGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAGGCCAACCACTAATGCAAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACATACCATGCCTCCGATGTTACCTCCACCTGGTGCTCCCCAGGTTCCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAACGGTTCCTGGAAGCACTGCTACACCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCTTCATCTGGAAGTTATGATAACTACAATACGAGTGCTCAAGCACCTGAGGGTAATCACTGACCTGGTTGAACTGTTCACTCTGCATAATTCTATCTCCATTGGAGTCTTATGACTAGAGCTATTTGTGCTCTCCCTACCAGCTGTTCATCAAATGAGGACTCTCCATTTGTGATCATATATAGAGTAATCATTGGTATGTAGCATGTCCAGCACTTGAATGCAAGAAATTTTTTATTAGTTATGTTTTTGGTCCTAGATGAAAGATTTATATTGAAGTGCCAATTACTAGAACTTTTTTTACATGACTTGTTCATGATAGGTTCTATTATGCAATTAATTTGTTTTTAATCTGAGTTTTATTAGTGATAAATGTAGTTGTATTGTAGATTTGGGGAAAAAATCATAATTTCATATCATGTATTATTGGATCTGAATTCCCTAAAAGCATTGCATGTTGAATCAACAACATAAAGTGCATTGATGCCTTGATTTCAAATTATGCATTTTGATACT
>Glyma.10g021900.1 sequence-type=CDS polypeptide=Glyma.10g021900.1.p locus=Glyma.10g021900 ID=Glyma.10g021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACTTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCTGCATTTCAGCAAGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAGGCCAACCACTAATGCAAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACATACCATGCCTCCGATGTTACCTCCACCTGGTGCTCCCCAGGTTCCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAACGGTTCCTGGAAGCACTGCTACACCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCTTCATCTGGAAGTTATGATAACTACAATACGAGTGCTCAAGCACCTGAGGTTCACTCTGCATAA >Glyma.10g021900.2 sequence-type=CDS polypeptide=Glyma.10g021900.2.p locus=Glyma.10g021900 ID=Glyma.10g021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACTTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCTGCATTTCAGCAAGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAGGCCAACCACTAATGCAAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACATACCATGCCTCCGATGTTACCTCCACCTGGTGCTCCCCAGGTTCCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAACGGTTCCTGGAAGCACTGCTACACCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCTTCATCTGGAAGTTATGATAACTACAATACGAGTGCTCAAGCACCTGAGGGTAATCACTGA >Glyma.10g021900.3 sequence-type=CDS polypeptide=Glyma.10g021900.3.p locus=Glyma.10g021900 ID=Glyma.10g021900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACTTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCTGCATTTCAGCAAGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAGGCCAACCACTAATGCAAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACATACCATGCCTCCGATGTTACCTCCACCTGGTGCTCCCCAGGTTCCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAACGGTTCCTGGAAGCACTGCTACACCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCTTCATCTGGAAGTTATGATAACTACAATACGAGTGCTCAAGCACCTGAGGGTAATCACTGA >Glyma.10g021900.4 sequence-type=CDS polypeptide=Glyma.10g021900.4.p locus=Glyma.10g021900 ID=Glyma.10g021900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTCGGTACTACTGTGACTACTGCGACACCTATTTGACCCACGATTCTCCATCTGTTAGAAAGCAGCACAATGCAGGTTACAAACACAAGGCAAATGTGAGGACTTACTACCAGCAATTTGAAGAACAACAAACACAAAGTTTAATTGATCAAAGGATCAAAGAACATCTTGGGCAAGCTGCTGCATTTCAGCAAGTTGGTGTGGCTTATAATCATCTAATGGTTCAGAGGCCTAACCTTCCTCCTGTATTGCCACCACCAAGATTGCCTATTCCTGGAAATGCACAAATACCTGGAGGCCAACCACTAATGCAAGGGATGAGACCACCTGTCTTTCCTAGACCTCCTGGTGCACCAGGATATGTTTCTGCACATACCATGCCTCCGATGTTACCTCCACCTGGTGCTCCCCAGGTTCCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAACGGTTCCTGGAAGCACTGCTACACCAGCTTCCAATGGTGCTCCCTCTATGGTATCATCAGCAATGTATCAAGCCAATCCTCCGGCACCTTCATCTGGAAGTTATGATAACTACAATACGAGTGCTCAAGCACCTGAGGGTAATCACTGA
>Glyma.10g021900.1.p sequence-type=predicted peptide transcript=Glyma.10g021900.1 locus=Glyma.10g021900 ID=Glyma.10g021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGGQPLMQGMRPPVFPRPPGAPGYVSAHTMPPMLPPPGAPQVPGQLNTIPRPPSLAPPPTVPGSTATPASNGAPSMVSSAMYQANPPAPSSGSYDNYNTSAQAPEVHSA* >Glyma.10g021900.2.p sequence-type=predicted peptide transcript=Glyma.10g021900.2 locus=Glyma.10g021900 ID=Glyma.10g021900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGGQPLMQGMRPPVFPRPPGAPGYVSAHTMPPMLPPPGAPQVPGQLNTIPRPPSLAPPPTVPGSTATPASNGAPSMVSSAMYQANPPAPSSGSYDNYNTSAQAPEGNH* >Glyma.10g021900.3.p sequence-type=predicted peptide transcript=Glyma.10g021900.3 locus=Glyma.10g021900 ID=Glyma.10g021900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGGQPLMQGMRPPVFPRPPGAPGYVSAHTMPPMLPPPGAPQVPGQLNTIPRPPSLAPPPTVPGSTATPASNGAPSMVSSAMYQANPPAPSSGSYDNYNTSAQAPEGNH* >Glyma.10g021900.4.p sequence-type=predicted peptide transcript=Glyma.10g021900.4 locus=Glyma.10g021900 ID=Glyma.10g021900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGGQPLMQGMRPPVFPRPPGAPGYVSAHTMPPMLPPPGAPQVPGQLNTIPRPPSLAPPPTVPGSTATPASNGAPSMVSSAMYQANPPAPSSGSYDNYNTSAQAPEGNH*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||