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Report for Sequence Feature Glyma.10g019900

Feature Type:gene_model
Chromosome:Gm10
Start:1736235
stop:1737575
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g019900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62760.1AT Glutathione S-transferase family protein JGI N/AIEA
GO:0006749GO-bp glutathione metabolic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004364GO-mf glutathione transferase activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG0867 KOG Glutathione S-transferase JGI N/AIEA
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI N/AIEA
PTHR11260:SF55Panther JGI N/AIEA
PF00043PFAM Glutathione S-transferase, C-terminal domain JGI N/AIEA
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI N/AIEA
GN7V-50410SoyCyc9-rxn glutathione transferase Plant Metabolic Network ISS

Proteins Associated with Glyma.10g019900
LocusGene SymbolProtein Name
GSTF7 glutathione S-transferase GST 21

Expression Patterns of Glyma.10g019900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g019900
ParalogEvidenceComments
Glyma.02g154300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g019900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g02460 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g019900
>Glyma.10g019900.2 sequence-type=transcript locus=Glyma.10g019900 ID=Glyma.10g019900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTTCTTTTTCTTAGTAAGCTAGCTCCCAGCCACACTAACTTTAATTATTTGTGTTGCACATGCATGCAGCCCTTTGGTTTCATTCCAGTACTGGAAGATGGTGATCTCACTCTTTTTGAGTCCAGGGCCATTACCGCATACGTGGCTGAAAAATTCAAGGAAACAGAACCCGATCTGATAAGGCACAAGGATGCAAAAGAAGCAGCACTGGTGAAGGTATGGACAGAGGTAGAGTCTCATTACTACGAGCCAGCAGTGTCGCCCATTATCTACGAGTACTTCGTGGCCCCTTTCCAAGGCAAAGAACCCGACAAGTCAGTGATTGACACCAACGTTGAGAAGCTGAAGACGGTGCTTGATGTGTACGAGGCCAAGCTGAGCAGCACCAAGTACCTTGCTGGGGACTTTTATAGCCTTGCTGATCTTAGCCATGTTTCTGAAACTCACTACTTGATGCAGACCCCTTGTGCTTCCATGATCAATGAGCTTCCTCATGTAAAGGCTTGGTGGGAGGATATCTCTTCTAGGCCTGCTTTCAATAAGGTTGTGGGAGGAATGAGTTTTGGTCAGAATCATTGAGGAATGAGTGTGTTTTGTGAGGTTCAATTACTACCTAATTTGTTGCAGTATCTAGTCAAGCAAATGTGGTGTTGGGTGTTCTTGAAACTTGTTTCATTTCTTATAACTAGAATTAATTAGGAAAACGAATCAATTTTTAGAGGGGTCTTTAAGAAAAAGGACTTTAATAGTTCCTTTTGTCTTATTTGATTAATTTAAAATTTTATGTTGTAGTGTTTTGATGATATGTTTTAATATCCTATTTCATCAGGTGttttaaattat
Coding sequences of Glyma.10g019900
>Glyma.10g019900.1 sequence-type=CDS polypeptide=Glyma.10g019900.1.p locus=Glyma.10g019900 ID=Glyma.10g019900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTTTAAGCTTTATGGTCTACCAATGTCCACAAACACTACACGTGCCATGATCTGTCTCCATGAGAAAGAGGTCGATTTTGAACTTGTTCCGGTCAATGTGTTCGCTGCTGAGCACAAGCAGCCTCCTTTTCTCTCCAAGAATCCCTTTGGTTTCATTCCAGTACTGGAAGATGGTGATCTCACTCTTTTTGAGTCCAGGGCCATTACCGCATACGTGGCTGAAAAATTCAAGGAAACAGAACCCGATCTGATAAGGCACAAGGATGCAAAAGAAGCAGCACTGGTGAAGGTATGGACAGAGGTAGAGTCTCATTACTACGAGCCAGCAGTGTCGCCCATTATCTACGAGTACTTCGTGGCCCCTTTCCAAGGCAAAGAACCCGACAAGTCAGTGATTGACACCAACGTTGAGAAGCTGAAGACGGTGCTTGATGTGTACGAGGCCAAGCTGAGCAGCACCAAGTACCTTGCTGGGGACTTTTATAGCCTTGCTGATCTTAGCCATGTTTCTGAAACTCACTACTTGATGCAGACCCCTTGTGCTTCCATGATCAATGAGCTTCCTCATGTAAAGGCTTGGTGGGAGGATATCTCTTCTAGGCCTGCTTTCAATAAGGTTGTGGGAGGAATGAGTTTTGGTCAGAATCATTGA

>Glyma.10g019900.2 sequence-type=CDS polypeptide=Glyma.10g019900.2.p locus=Glyma.10g019900 ID=Glyma.10g019900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCCCTTTGGTTTCATTCCAGTACTGGAAGATGGTGATCTCACTCTTTTTGAGTCCAGGGCCATTACCGCATACGTGGCTGAAAAATTCAAGGAAACAGAACCCGATCTGATAAGGCACAAGGATGCAAAAGAAGCAGCACTGGTGAAGGTATGGACAGAGGTAGAGTCTCATTACTACGAGCCAGCAGTGTCGCCCATTATCTACGAGTACTTCGTGGCCCCTTTCCAAGGCAAAGAACCCGACAAGTCAGTGATTGACACCAACGTTGAGAAGCTGAAGACGGTGCTTGATGTGTACGAGGCCAAGCTGAGCAGCACCAAGTACCTTGCTGGGGACTTTTATAGCCTTGCTGATCTTAGCCATGTTTCTGAAACTCACTACTTGATGCAGACCCCTTGTGCTTCCATGATCAATGAGCTTCCTCATGTAAAGGCTTGGTGGGAGGATATCTCTTCTAGGCCTGCTTTCAATAAGGTTGTGGGAGGAATGAGTTTTGGTCAGAATCATTGA
Predicted protein sequences of Glyma.10g019900
>Glyma.10g019900.1.p sequence-type=predicted peptide transcript=Glyma.10g019900.1 locus=Glyma.10g019900 ID=Glyma.10g019900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVFKLYGLPMSTNTTRAMICLHEKEVDFELVPVNVFAAEHKQPPFLSKNPFGFIPVLEDGDLTLFESRAITAYVAEKFKETEPDLIRHKDAKEAALVKVWTEVESHYYEPAVSPIIYEYFVAPFQGKEPDKSVIDTNVEKLKTVLDVYEAKLSSTKYLAGDFYSLADLSHVSETHYLMQTPCASMINELPHVKAWWEDISSRPAFNKVVGGMSFGQNH*

>Glyma.10g019900.2.p sequence-type=predicted peptide transcript=Glyma.10g019900.2 locus=Glyma.10g019900 ID=Glyma.10g019900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQPFGFIPVLEDGDLTLFESRAITAYVAEKFKETEPDLIRHKDAKEAALVKVWTEVESHYYEPAVSPIIYEYFVAPFQGKEPDKSVIDTNVEKLKTVLDVYEAKLSSTKYLAGDFYSLADLSHVSETHYLMQTPCASMINELPHVKAWWEDISSRPAFNKVVGGMSFGQNH*






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