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Report for Sequence Feature Glyma.10g019100

Feature Type:gene_model
Chromosome:Gm10
Start:1652905
stop:1655407
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27720.1AT Small nuclear ribonucleoprotein family protein JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0000956GO-bp nuclear-transcribed mRNA catabolic process EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
KOG3293 KOG Small nuclear ribonucleoprotein (snRNP) JGI N/AIEA
PTHR23338Panther SMALL NUCLEAR RIBONUCLEOPROTEIN SM JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g019100 not represented in the dataset

Glyma.10g019100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.02g155300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma10g02380 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.10g019100.1 sequence-type=CDS polypeptide=Glyma.10g019100.1.p locus=Glyma.10g019100 ID=Glyma.10g019100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCCCCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGCTAGTGGAACTGAAAAATGGGGAGACTTATAACGGGCACTTGGTTAATTGTGATACATGGATGAACATTCATCTCCGAGAAGTCATTTGTACCTCTAAAGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAGGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGCACTGATCGCAAACCCCCTGGTGTGGGACGTGGAAGAGGAAGAGGTAGGGAGGATGGTCCTGGTGGACGTCAACCAAAAGGAATTGGGCGTGGCCTTGATGAAGGTGGACCTAAAGGACAAGGAGGACGAGGTAGGGGTGGTCCCGGTGGAAAGCCTGGTGGAAACAGAGGTGGAGGGCGAGGTAGAGGTTGA

>Glyma.10g019100.1.p sequence-type=predicted peptide transcript=Glyma.10g019100.1 locus=Glyma.10g019100 ID=Glyma.10g019100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRQPKGIGRGLDEGGPKGQGGRGRGGPGGKPGGNRGGGRGRG*







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