Glyma.10g018900

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Report for Sequence Feature Glyma.10g018900

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1632297
stop:	1633515
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g018900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02870.1	AT		JGI	N/A	IEA
GO:0042273	GO-bp	ribosomal large subunit biogenesis	EnsemblGenomes	N/A	IEA
GO:0005730	GO-cc	nucleolus	EnsemblGenomes	N/A	IEA
KOG4771	KOG	Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis	JGI	N/A	IEA
PF09420	PFAM	Ribosome biogenesis protein Nop16	JGI	N/A	IEA

Expression Patterns of Glyma.10g018900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.10g018900

Paralog	Evidence	Comments
Glyma.02g155400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g018900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g02360	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.10g018900

Limit To All Plant Sequences

>Glyma.10g018900.2 sequence-type=transcript locus=Glyma.10g018900 ID=Glyma.10g018900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACCATGGTAATCGCACAGTAGAAGCCCGAGAAACGACGTCGCTGAAGCTGTGCTGAAATAACGAGACATTTTGTGCCCTAACCTAGAGAAAACCTAAAAGCCTCGTTGGCGGTAGCGGCAGTGACAGGAGAATGGGAAGGTCGAGAAGAAAGTACAAGCAATCGAGAACCAAGGTCCGTGTGGGACTCCCTAAGAAGAACCCTAGGCTTTTCAAACCCTCTTTCTCCGTTCCACCCAAGCTCTTGCAATCCCTCGACCAAGAGCCTCAATGGGACGACCAAGGCACCGTTAACACCAACTACTCCTCCTTTGGCGTTCTCTCTGACCCTAACTCCCTCACCGAACTCTCTTCCGATCCTCAAACCATCGATTCCGGCAGCGATCTCGAAGAAGACGACTTGAAATCTGCCCTAGGAAAGAAGCGAAGGGATGGGAGGAGCGCGCCGCCTCAGCCTCTGACTGCAATGCAACGGATTCATATCAGTCGTCTCGTCGCTAAATACGGAGATGATTATCAGGTTTGATAttttcgatatttttttctttttcttttttcgtttggggtttttaaaggttttttgttattgttgttgtttttgttttgCAGAGTATGTTGGTGGATATAAAGCTGAATCCGATGCAGCATTCAATTGGAACTCTGCAGAAGCTGTGCATGAGGTATCATATGTATCAAAATAAGAACCCGCTCCTTAAGGCCAAATGAAATGGGAGCTTAATTAATTAATCCATGGATGGAGATGCAATGATTGGAGTGGATCGTTTAGCCAAAATTTTTGTCACAGTGAGGACGTGTTTCTCTACCATGTCATCGTTGAGAAATTTTGTTAATGCTTTTGAATTTTTGAATTATTTGTGGATTTTTGTTGTGATAGATTAGGCATTCTGGACCTCTGCTCTTCCAGTCTTCCTAACCTGCTACCACCAAGATTATGTAGCATTTTATTATAGAATTAGATTTTCAATCATGAAATAGAGTTACATACATGCACTTTTGGAGTTTTCACACTCTTAAGAAATCATCTTTGTTAGATTAGGATTTTTTAAGTAATTATTATAAAATTATACGTTTGGTTTTTAC

Coding sequences of Glyma.10g018900

Limit To All Plant Sequences

>Glyma.10g018900.1 sequence-type=CDS polypeptide=Glyma.10g018900.1.p locus=Glyma.10g018900 ID=Glyma.10g018900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGTCGAGAAGAAAGTACAAGCAATCGAGAACCAAGGTCCGTGTGGGACTCCCTAAGAAGAACCCTAGGCTTTTCAAACCCTCTTTCTCCGTTCCACCCAAGCTCTTGCAATCCCTCGACCAAGAGCCTCAATGGGACGACCAAGGCACCGTTAACACCAACTACTCCTCCTTTGGCGTTCTCTCTGACCCTAACTCCCTCACCGAACTCTCTTCCGATCCTCAAACCATCGATTCCGGCAGCGATCTCGAAGAAGACGACTTGAAATCTGCCCTAGGAAAGAAGCGAAGGGATGGGAGGAGCGCGCCGCCTCAGCCTCTGACTGCAATGCAACGGATTCATATCAGTCGTCTCGTCGCTAAATACGGAGATGATTATCAGAGTATGTTGGTGGATATAAAGCTGAATCCGATGCAGCATTCAATTGGAACTCTGCAGAAGCTGTGCATGAGGTATCATATGTATCAAAATAAGAACCCGCTCCTTAAGGCCAAATGA

>Glyma.10g018900.2 sequence-type=CDS polypeptide=Glyma.10g018900.2.p locus=Glyma.10g018900 ID=Glyma.10g018900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGGTCGAGAAGAAAGTACAAGCAATCGAGAACCAAGGTCCGTGTGGGACTCCCTAAGAAGAACCCTAGGCTTTTCAAACCCTCTTTCTCCGTTCCACCCAAGCTCTTGCAATCCCTCGACCAAGAGCCTCAATGGGACGACCAAGGCACCGTTAACACCAACTACTCCTCCTTTGGCGTTCTCTCTGACCCTAACTCCCTCACCGAACTCTCTTCCGATCCTCAAACCATCGATTCCGGCAGCGATCTCGAAGAAGACGACTTGAAATCTGCCCTAGGAAAGAAGCGAAGGGATGGGAGGAGCGCGCCGCCTCAGCCTCTGACTGCAATGCAACGGATTCATATCAGTCGTCTCGTCGCTAAATACGGAGATGATTATCAGGTTTGA

Predicted protein sequences of Glyma.10g018900

Limit To All Plant Sequences

>Glyma.10g018900.1.p sequence-type=predicted peptide transcript=Glyma.10g018900.1 locus=Glyma.10g018900 ID=Glyma.10g018900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRSRRKYKQSRTKVRVGLPKKNPRLFKPSFSVPPKLLQSLDQEPQWDDQGTVNTNYSSFGVLSDPNSLTELSSDPQTIDSGSDLEEDDLKSALGKKRRDGRSAPPQPLTAMQRIHISRLVAKYGDDYQSMLVDIKLNPMQHSIGTLQKLCMRYHMYQNKNPLLKAK*

>Glyma.10g018900.2.p sequence-type=predicted peptide transcript=Glyma.10g018900.2 locus=Glyma.10g018900 ID=Glyma.10g018900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRSRRKYKQSRTKVRVGLPKKNPRLFKPSFSVPPKLLQSLDQEPQWDDQGTVNTNYSSFGVLSDPNSLTELSSDPQTIDSGSDLEEDDLKSALGKKRRDGRSAPPQPLTAMQRIHISRLVAKYGDDYQV*

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