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Report for Sequence Feature Glyma.10g018800

Feature Type:gene_model
Chromosome:Gm10
Start:1627550
stop:1631309
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g018800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02860.1AT SPX (SYG1/Pho81/XPR1) domain-containing protein JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
PTHR23041Panther RING FINGER DOMAIN-CONTAINING JGI N/AIEA
PTHR23041:SF6Panther JGI N/AIEA
PF03105PFAM SPX domain JGI N/AIEA

Expression Patterns of Glyma.10g018800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g018800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g02350 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g018800
>Glyma.10g018800.1 sequence-type=CDS polypeptide=Glyma.10g018800.1.p locus=Glyma.10g018800 ID=Glyma.10g018800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTCTGCAAGACCTACCAGCAGTACATGCAAGGACATGGCCACAACAAGCTCCCTTCTGTTGGCTTCAAGAACCTCAAAAAGATCATTAAAAGCTGCAGGAGAGCCTCCACTCAACCTACCTGCCCTGATCATTGCCCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAAATGTCAGATATAGTAGGGTGCTTTAATCAGCGCGCGCAGCAATTGCTGGAACTACATCTTGCTTCTGGCTTCAGAAAGTACTTTCTCATGTTGAAAGGAAAATTACACAAGAATCATACTGCTCTAATCGAAGAAGGAAAAGATCTAGTCATATATGCACTCATAAATTCCATCGCAATTCGAAAAATCTTGAAGAAATATGATAAGATTCATTATTCCAAGCAAGGCCAATTATTCAAGTCGAAAGTCCAGACCATGCACAAGGAAATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATTGCCTTACACATTAACTTAAGGGAAACAAAATCCAAGCCAAGGGAGGCATCCGCACTGTTTGATGGATGTTATCTCACATTCACGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCGTCAAAATTGATATTGACTTGACCTGCTCTATATGCTTGGATACAGTGTTTGATTCAGTTTCTCTGACATGCGGCCACATATTCTGCTACACCTGTGCTTGCTCAACTGCATCAGTTACCATTGTCGATGGACTTAAGGCAGCAAATCCTAAAGAAAAATGTCCTCTATGCCGAGAGGGAAGAGTTTACGAAGATGCTGTGCATTTGGAAGAATTAAATATTCTGCTAGGCCGAAGCTGCAGGGAGTACTGGGAGCAAAGGCTTCAGATGGAGAGGGTAGAGAGGGTTAAGCAAGTTAAGGAGCACTGGGAAACGCAGTGTAGGGCGTTCATGGGCATCTAA
Predicted protein sequences of Glyma.10g018800
>Glyma.10g018800.1.p sequence-type=predicted peptide transcript=Glyma.10g018800.1 locus=Glyma.10g018800 ID=Glyma.10g018800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFCKTYQQYMQGHGHNKLPSVGFKNLKKIIKSCRRASTQPTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQQLLELHLASGFRKYFLMLKGKLHKNHTALIEEGKDLVIYALINSIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLCELIALHINLRETKSKPREASALFDGCYLTFTDGKPSLTCELFDSVKIDIDLTCSICLDTVFDSVSLTCGHIFCYTCACSTASVTIVDGLKAANPKEKCPLCREGRVYEDAVHLEELNILLGRSCREYWEQRLQMERVERVKQVKEHWETQCRAFMGI*






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