SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g018000

Feature Type:gene_model
Chromosome:Gm10
Start:1576349
stop:1582214
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g018000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47600.1AT magnesium/proton exchanger JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
KOG1306 KOG Ca2+/Na+ exchanger NCX1 and related proteins JGI N/AIEA
PTHR11878Panther SODIUM/CALCIUM EXCHANGER JGI N/AIEA
PTHR11878:SF3Panther JGI N/AIEA
PF01699PFAM Sodium/calcium exchanger protein JGI N/AIEA

Expression Patterns of Glyma.10g018000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g018000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g02250 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g018000
>Glyma.10g018000.2 sequence-type=transcript locus=Glyma.10g018000 ID=Glyma.10g018000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCGCGCGGTTGTGATTTCTAGTTTCAAGGGAAATGGGCAAATAATTTATCATTTAAAAGTTTTTTGACACACAGAACAAGCTTCACCTTGCAACACCACGTTCTATAAAAAGCTTATTCCCGAATCCAGTTTCTGCTCCATTTTTGTTTTCTTCAAGTAACAAAAATCGTTTTCGCCTGAAAAAAAGTCCCTGCGATCAACTCCGGCGAACTCTGCCTTCGCCGGTCAGATCGTCGGGATTGTGAATGTTTTCTTGCGTGAAGTCTCATAATTAAACCGCAATTTGTACTGAGTGACACCTCACTGCCAAAAGAGGCCGAAAGAATGGTTCCCTTTTCCAACATACTGGGGCACGAAAAGTGTGAAAGCTACTTAATTTTTGGCGGAGAAACTACCCTTGGAGATAATTTTCGGGCATTTTTTTACTTCCTTTGCCTTGCTTATTGTTTTATCGGATTATCGGCTATAACTGCTCGCTTTTTTCAATCGATGGAAAATGTGGTCAAGCACACAAGGAAGGTAGTGGAGGTAGATCCTGTTACTAAAACTGAAACTATTAGGCATGAAAAAGTTTGGAATTACACTATTGCGGATATTAGCTTGTTGACCTTTGGAACTAGCTTTCCCCAGATATCATTAGCCACCATTGATGCTATACAAAACATAGGGAAGCTGTATGCTGGAGGTTTGGGACCCGGAACACTTGTTGGTTCTGCAGCATTTGACCTGTTCCCCATCCACGCTGTTTGTGTAGTAGTTCCAAAAGCAGGAGAGCTGAAGAAGATTGCTGATCTAGGAGTATGGCTGGTGGAGCTGTTTTGGTCATTCTGGGCTTACATTTGGTTATACATAATTTTGGAGGTATGGACTCCAAACGTTGTGACTCTCTGGGAGGCATTGTTGACTGTACTGCAATACGGATTACTATTGACTCATGCTTATGCTCAAGACAAACGTTGGCCATATATTTCTCTACCTATTGCAAGAGATGAGAGGCCAGAGGATTGGGTGCCGGAAGAGACTCCTTATTTTCAACATGAAGCCCATGCGGAGGTGGATTTCTCTGATATAAAGCATGTTAATGAAGAAAATGGGGACACTGTTGATATTTTTTCCATTCATTCAGAAAACCCCACGGATCCATTATATGCCAGAGTACCTTCAATAAATGATGAGGCTGAAATTTTGGACAAAGCTAAGGAAACGACATTGGTGGATACACACTTGCTTACAATTTGGAGACAGCAATTTCTGGATGCACTGAGGTTGTTGAGACCAGAATCAAAAAAAATAAAAAATGCATGTCTCCGCTTAGCTTGTATTTTCTGGCAATTGCTGATTTTACCTTGGAGGTTTCTGTTTGCATTTGTTCCTCCATGCCAAATTGCTCATGGATGGATCTCCTTCATTTGCTCTCTGCTTTTCATCTCTGGGATAGCTTACGTTGTGACTAAGATCACAGATGTTATAAGTTGTGTCACAGGGATAAATGCTTACGTGATAGCATTTACAGCCCTAGCCAGTGGAACCTCATGGCCTGATCTAGTGGCAAGCAAAATTGCTGCAGAACGTCAAAAAACTGCTGATTCTGCAATTGCAAACATCACTTGCAGTGAATATATATGTTGGTATTGGTGTTCCATGGCTTATTGATACTTTGTACAACTTCATAGCATATAGAGAACCTCTCCGAATCCAAAATGCAGGGGGACTAAGCTTTTCGTTGATTGTTTTCTTCTCCACTTCTGTCGGGTGTATCTCAGTTTTGGTTTTAAGGCGTATAATTTTTGGCGCAGAGCTAGGAGGGCCTAGGCTCTGGGCATGGATTACCTGTGCGTTCTTCATGTTGTTGTGGATTATTTTTGTTGTACTATCGTCACTCAAGGTTTCTGGATTCATTTAGAATTGTATATAGCAAATTTATTGTATAGATCCTTGGCAATATCCTTAGGTGCATTATGTTTTTCCGGTGCCCTCTCCAGTCATCATGGGCTCATGGCTGTTCGTCACGCTGACGGACTAGTTGGGTTTTTTCTTCTATTTTTCTTTCTTTTCATGTACTGTATTAAATAAATACTGATATTTTTGTAACAAAAAAATACTCAATTTTTGTTGGAATTTTTCTTTTTCTTTATATATCCACTTAAACGATGTTGTG
Coding sequences of Glyma.10g018000
>Glyma.10g018000.1 sequence-type=CDS polypeptide=Glyma.10g018000.1.p locus=Glyma.10g018000 ID=Glyma.10g018000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCCCTTTTCCAACATACTGGGGCACGAAAAGTGTGAAAGCTACTTAATTTTTGGCGGAGAAACTACCCTTGGAGATAATTTTCGGGCATTTTTTTACTTCCTTTGCCTTGCTTATTGTTTTATCGGATTATCGGCTATAACTGCTCGCTTTTTTCAATCGATGGAAAATGTGGTCAAGCACACAAGGAAGGTAGTGGAGGTAGATCCTGTTACTAAAACTGAAACTATTAGGCATGAAAAAGTTTGGAATTACACTATTGCGGATATTAGCTTGTTGACCTTTGGAACTAGCTTTCCCCAGATATCATTAGCCACCATTGATGCTATACAAAACATAGGGAAGCTGTATGCTGGAGGTTTGGGACCCGGAACACTTGTTGGTTCTGCAGCATTTGACCTGTTCCCCATCCACGCTGTTTGTGTAGTAGTTCCAAAAGCAGGAGAGCTGAAGAAGATTGCTGATCTAGGAGTATGGCTGGTGGAGCTGTTTTGGTCATTCTGGGCTTACATTTGGTTATACATAATTTTGGAGGTATGGACTCCAAACGTTGTGACTCTCTGGGAGGCATTGTTGACTGTACTGCAATACGGATTACTATTGACTCATGCTTATGCTCAAGACAAACGTTGGCCATATATTTCTCTACCTATTGCAAGAGATGAGAGGCCAGAGGATTGGGTGCCGGAAGAGACTCCTTATTTTCAACATGAAGCCCATGCGGAGGTGGATTTCTCTGATATAAAGCATGTTAATGAAGAAAATGGGGACACTGTTGATATTTTTTCCATTCATTCAGAAAACCCCACGGATCCATTATATGCCAGAGTACCTTCAATAAATGATGAGGCTGAAATTTTGGACAAAGCTAAGGAAACGACATTGGTGGATACACACTTGCTTACAATTTGGAGACAGCAATTTCTGGATGCACTGAGGTTGTTGAGACCAGAATCAAAAAAAATAAAAAATGCATGTCTCCGCTTAGCTTGTATTTTCTGGCAATTGCTGATTTTACCTTGGAGGTTTCTGTTTGCATTTGTTCCTCCATGCCAAATTGCTCATGGATGGATCTCCTTCATTTGCTCTCTGCTTTTCATCTCTGGGATAGCTTACGTTGTGACTAAGATCACAGATGTTATAAGTTGTGTCACAGGGATAAATGCTTACGTGATAGCATTTACAGCCCTAGCCAGTGGAACCTCATGGCCTGATCTAGTGGCAAGCAAAATTGCTGCAGAACGTCAAAAAACTGCTGATTCTGCAATTGCAAACATCACTTGCAGCAATTCAGTGAATATATATGTTGGTATTGGTGTTCCATGGCTTATTGATACTTTGTACAACTTCATAGCATATAGAGAACCTCTCCGAATCCAAAATGCAGGGGGACTAAGCTTTTCGTTGATTGTTTTCTTCTCCACTTCTGTCGGGTGTATCTCAGTTTTGGTTTTAAGGCGTATAATTTTTGGCGCAGAGCTAGGAGGGCCTAGGCTCTGGGCATGGATTACCTGTGCGTTCTTCATGTTGTTGTGGATTATTTTTGTTGTACTATCGTCACTCAAGGTTTCTGGATTCATTTAG

>Glyma.10g018000.2 sequence-type=CDS polypeptide=Glyma.10g018000.2.p locus=Glyma.10g018000 ID=Glyma.10g018000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCCCTTTTCCAACATACTGGGGCACGAAAAGTGTGAAAGCTACTTAATTTTTGGCGGAGAAACTACCCTTGGAGATAATTTTCGGGCATTTTTTTACTTCCTTTGCCTTGCTTATTGTTTTATCGGATTATCGGCTATAACTGCTCGCTTTTTTCAATCGATGGAAAATGTGGTCAAGCACACAAGGAAGGTAGTGGAGGTAGATCCTGTTACTAAAACTGAAACTATTAGGCATGAAAAAGTTTGGAATTACACTATTGCGGATATTAGCTTGTTGACCTTTGGAACTAGCTTTCCCCAGATATCATTAGCCACCATTGATGCTATACAAAACATAGGGAAGCTGTATGCTGGAGGTTTGGGACCCGGAACACTTGTTGGTTCTGCAGCATTTGACCTGTTCCCCATCCACGCTGTTTGTGTAGTAGTTCCAAAAGCAGGAGAGCTGAAGAAGATTGCTGATCTAGGAGTATGGCTGGTGGAGCTGTTTTGGTCATTCTGGGCTTACATTTGGTTATACATAATTTTGGAGGTATGGACTCCAAACGTTGTGACTCTCTGGGAGGCATTGTTGACTGTACTGCAATACGGATTACTATTGACTCATGCTTATGCTCAAGACAAACGTTGGCCATATATTTCTCTACCTATTGCAAGAGATGAGAGGCCAGAGGATTGGGTGCCGGAAGAGACTCCTTATTTTCAACATGAAGCCCATGCGGAGGTGGATTTCTCTGATATAAAGCATGTTAATGAAGAAAATGGGGACACTGTTGATATTTTTTCCATTCATTCAGAAAACCCCACGGATCCATTATATGCCAGAGTACCTTCAATAAATGATGAGGCTGAAATTTTGGACAAAGCTAAGGAAACGACATTGGTGGATACACACTTGCTTACAATTTGGAGACAGCAATTTCTGGATGCACTGAGGTTGTTGAGACCAGAATCAAAAAAAATAAAAAATGCATGTCTCCGCTTAGCTTGTATTTTCTGGCAATTGCTGATTTTACCTTGGAGGTTTCTGTTTGCATTTGTTCCTCCATGCCAAATTGCTCATGGATGGATCTCCTTCATTTGCTCTCTGCTTTTCATCTCTGGGATAGCTTACGTTGTGACTAAGATCACAGATGTTATAAGTTGTGTCACAGGGATAAATGCTTACGTGATAGCATTTACAGCCCTAGCCAGTGGAACCTCATGGCCTGATCTAGTGGCAAGCAAAATTGCTGCAGAACGTCAAAAAACTGCTGATTCTGCAATTGCAAACATCACTTGCAGTGAATATATATGTTGGTATTGGTGTTCCATGGCTTATTGA
Predicted protein sequences of Glyma.10g018000
>Glyma.10g018000.1.p sequence-type=predicted peptide transcript=Glyma.10g018000.1 locus=Glyma.10g018000 ID=Glyma.10g018000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVPFSNILGHEKCESYLIFGGETTLGDNFRAFFYFLCLAYCFIGLSAITARFFQSMENVVKHTRKVVEVDPVTKTETIRHEKVWNYTIADISLLTFGTSFPQISLATIDAIQNIGKLYAGGLGPGTLVGSAAFDLFPIHAVCVVVPKAGELKKIADLGVWLVELFWSFWAYIWLYIILEVWTPNVVTLWEALLTVLQYGLLLTHAYAQDKRWPYISLPIARDERPEDWVPEETPYFQHEAHAEVDFSDIKHVNEENGDTVDIFSIHSENPTDPLYARVPSINDEAEILDKAKETTLVDTHLLTIWRQQFLDALRLLRPESKKIKNACLRLACIFWQLLILPWRFLFAFVPPCQIAHGWISFICSLLFISGIAYVVTKITDVISCVTGINAYVIAFTALASGTSWPDLVASKIAAERQKTADSAIANITCSNSVNIYVGIGVPWLIDTLYNFIAYREPLRIQNAGGLSFSLIVFFSTSVGCISVLVLRRIIFGAELGGPRLWAWITCAFFMLLWIIFVVLSSLKVSGFI*

>Glyma.10g018000.2.p sequence-type=predicted peptide transcript=Glyma.10g018000.2 locus=Glyma.10g018000 ID=Glyma.10g018000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVPFSNILGHEKCESYLIFGGETTLGDNFRAFFYFLCLAYCFIGLSAITARFFQSMENVVKHTRKVVEVDPVTKTETIRHEKVWNYTIADISLLTFGTSFPQISLATIDAIQNIGKLYAGGLGPGTLVGSAAFDLFPIHAVCVVVPKAGELKKIADLGVWLVELFWSFWAYIWLYIILEVWTPNVVTLWEALLTVLQYGLLLTHAYAQDKRWPYISLPIARDERPEDWVPEETPYFQHEAHAEVDFSDIKHVNEENGDTVDIFSIHSENPTDPLYARVPSINDEAEILDKAKETTLVDTHLLTIWRQQFLDALRLLRPESKKIKNACLRLACIFWQLLILPWRFLFAFVPPCQIAHGWISFICSLLFISGIAYVVTKITDVISCVTGINAYVIAFTALASGTSWPDLVASKIAAERQKTADSAIANITCSEYICWYWCSMAY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo