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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02030.1 | AT | Vps51/Vps67 family (components of vesicular transport) protein | JGI | N/A | IEA |
| GO:0006891 | GO-bp | intra-Golgi vesicle-mediated transport | JGI | N/A | IEA |
| GO:0007030 | GO-bp | Golgi organization | EnsemblGenomes | N/A | IEA |
| GO:0032456 | GO-bp | endocytic recycling | EnsemblGenomes | N/A | IEA |
| GO:0042147 | GO-bp | retrograde transport, endosome to Golgi | EnsemblGenomes | N/A | IEA |
| GO:0048193 | GO-bp | Golgi vesicle transport | EnsemblGenomes | N/A | IEA |
| GO:0000938 | GO-cc | GARP complex | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0017119 | GO-cc | Golgi transport complex | JGI | N/A | IEA |
| GO:1990745 | GO-cc | EARP complex | EnsemblGenomes | N/A | IEA |
| KOG2346 | KOG | Uncharacterized conserved protein | JGI | N/A | IEA |
| PTHR15954 | Panther | UNCHARACTERIZED | JGI | N/A | IEA |
| PTHR15954:SF4 | Panther | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG | JGI | N/A | IEA |
| PF08700 | PFAM | Vps51/Vps67 | JGI | N/A | IEA |
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Glyma.10g013400 not represented in the dataset |
Glyma.10g013400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g012800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g01660 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g013400.1 sequence-type=CDS polypeptide=Glyma.10g013400.1.p locus=Glyma.10g013400 ID=Glyma.10g013400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGGGAGAAGAAGTAGTACCAATGGACGACAAAGCGAAGAGGATGCGAGATCTGCTATCGAGTTTCTACTCCCCTGACCCTTCCATCTCCAACAACACCTCCAAACACGCTTCTCTCGACGACATCAATTCTACTTCCTTCGATCCCGATCAGTACATGAACATCCTGGCACACAAGTCCAATTTGGAAGGCCTGCTCCAACGCCACGTTGAAATGGCAGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTGGTTTACGAGAATTACAACAAGTTCATCAGTGCTACAGACACTATAAAGAGGATGAAAAGTAACATTTCCGGGATGGAGACGAATATGGAGCAGCTTCTTGAGAAGATAATGTCTGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTACATCGGACTTGTAATCTTCTTCGTAAAGTTCAGTTCATATATGACCTACCCGATAGACTAAGCAAGTGCATCAAGTCGGAGGCCTATGCAGATGCAGTCAGGTTTTACATTGGAGCAATGCCAATTTTTAAGGCATATGGAGATTCTTCATTCCGGGATTGTAAACAAGCTTCTGAAGAAGCAATAGCTGTTGTAGTAAAAAACTTGCAGGGGAAGCTATTTTCAGATTCTGAATCAATACAAGTGAGAGCTGATGCAGCAGTGCTTCTTAAGCAGTTGGATTTTCCGGTGAACAATTTGAAGGCAAAGTTATTTGAAAAGTTAGAACAATCTATTACAGACATTCGACTGAACCCTGAAGAAATAAATAATCCTTCAGGGGACCGTTCTACTCATGAGGCAGCTATACATGAATTTGTGGAGGCAGTTTGTGCATTTCGTGTAATATTTCCTGATTCTGAAGAACAATTGGTTAAAGTTGCTGAAGATTTGGTTACCAAGAACTTTGTAATTGCTGAGGAATATGTAAAGACACGGATTTCCCCAGAAGATCTACTTGGTGTTCTTCGAGTTATCTGGAATGACGTGCTCCTGATAGATGAAGTCTTACAGGAAGCAGCTCTCTCTAATCATTCTCTTGAGGCTGCAAAGGTTGTTGTCACGTCGTTTGTTAGAAGTGCATTTTTTCATCTTCTACAAGACATCTCAGATTCCCTCTTACAAATCCTGAAAAAGGAAGGAGCAGAACAGTGCACTCTTGATGTTGTTCTTGATGCAAGTACAAAAGCAGTTCTTCAAGGAGGACTGAATGTGTTGCTGGACTTTCGCAAAATTTTAGATGATGACTCTGGGATCCTAGTTAGATTAAGAGAGTTAATCATTGATTGGGTTCAAGAAGGACTTCAAGAATTTTTTAGGCAACTTGAGGATCAGTTCCTTCTGTTTTCAGGAAGAAATCATTCATCTATTCAAGTACACGGTTTGGCAGAGGGAACTCAAGGTGATAAAGCTTTTGCTGGCCTTGTCCTAGTGCTGGCACAATTGTCTGCTTTCATTGAACAAACCGTCATCCCAAAAGTCACTGAGGCAAGGGAAATAGCTGCTTCCTTTTCTGGTGGTAGTGTTAGAGGCTATGAATCTGGACCTGCCTTTGTTCCTGGAGAAATATGTCGAAAATTTCGGTCAGCTGGTGAAAAATTCTTGCACCTGTACATAAATATGAGAAATCAGAGGGTATCACTTCTCCTGAAGAAGAGGTTTACAACCCCTAATTGGGTTAAGCATAAGGAACCAAGAGAAGTTCATATGTTTGTTGATCTATTTCTTCAAGAGCTTGAAATTATAGTTAACGAAGTGAAGCAGATTTTGCCTCAAGGTAGACGTAAGCACCACAGGACTGATAGTAATGGAAGTAGTGCTTCATCAAGGAGCAATCCCTTGCGGGAGGAGAAACTGGTTAGGTCAAATACTCAAAGGGCAAGGAGCCAGCTTTTGGAAACGCATCTTGCAAAATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGGAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAATTTGTCCGACTCCAGACTTTTAACCGAAGTGGATTCCAGCAAATTCAATTGGATATCCAGTTCGTAAGGATCCCTTTAAGAGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAGGTGATTGTTGCTACTGCTGAACGGTGTCTAGATCCGATTCCATTGGAGCCTCCCATATTGGACAAACTTATACGAGCAAAGTTGGCTAAAACCGAGGAGCAAAATACAATTTCTTCATAA
>Glyma.10g013400.1.p sequence-type=predicted peptide transcript=Glyma.10g013400.1 locus=Glyma.10g013400 ID=Glyma.10g013400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVGEEVVPMDDKAKRMRDLLSSFYSPDPSISNNTSKHASLDDINSTSFDPDQYMNILAHKSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKSNISGMETNMEQLLEKIMSVQSRSDSVNTSLFDKREHIEKLHRTCNLLRKVQFIYDLPDRLSKCIKSEAYADAVRFYIGAMPIFKAYGDSSFRDCKQASEEAIAVVVKNLQGKLFSDSESIQVRADAAVLLKQLDFPVNNLKAKLFEKLEQSITDIRLNPEEINNPSGDRSTHEAAIHEFVEAVCAFRVIFPDSEEQLVKVAEDLVTKNFVIAEEYVKTRISPEDLLGVLRVIWNDVLLIDEVLQEAALSNHSLEAAKVVVTSFVRSAFFHLLQDISDSLLQILKKEGAEQCTLDVVLDASTKAVLQGGLNVLLDFRKILDDDSGILVRLRELIIDWVQEGLQEFFRQLEDQFLLFSGRNHSSIQVHGLAEGTQGDKAFAGLVLVLAQLSAFIEQTVIPKVTEAREIAASFSGGSVRGYESGPAFVPGEICRKFRSAGEKFLHLYINMRNQRVSLLLKKRFTTPNWVKHKEPREVHMFVDLFLQELEIIVNEVKQILPQGRRKHHRTDSNGSSASSRSNPLREEKLVRSNTQRARSQLLETHLAKLFKQKVEIFTKVEYTQESVVTTLVKLGLKSFQEFVRLQTFNRSGFQQIQLDIQFVRIPLREIVEDEAAIDFLLDEVIVATAERCLDPIPLEPPILDKLIRAKLAKTEEQNTISS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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