SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g011000

Feature Type:gene_model
Chromosome:Gm10
Start:1040839
stop:1043359
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g011000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01950.1AT glycerol-3-phosphate acyltransferase 3 JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0010143GO-bp cutin biosynthetic process EnsemblGenomesN/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups JGI N/AIEA
GO:0016791GO-mf phosphatase activity EnsemblGenomesN/AIEA
GO:0090447GO-mf glycerol-3-phosphate 2-O-acyltransferase activity EnsemblGenomesN/AIEA
PTHR15486Panther ANCIENT UBIQUITOUS PROTEIN JGI N/AIEA
PF01553PFAM Acyltransferase JGI N/AIEA
PHOSLIPSYN2-PWYSoyCyc9 superpathway of phospholipid biosynthesis II (plants) Plant Metabolic Network ISS
PWY-5667SoyCyc9 CDP-diacylglycerol biosynthesis I Plant Metabolic Network ISS
PWY4FS-8SoyCyc9 phosphatidylglycerol biosynthesis II (non-plastidic) Plant Metabolic Network ISS
TRIGLSYN-PWYSoyCyc9 diacylglycerol and triacylglycerol biosynthesis Plant Metabolic Network ISS
GN7V-60919SoyCyc9-rxn acyl-CoA:sn-glycerol-3-phosphate 1-O-acyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.10g011000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g011000
ParalogEvidenceComments
Glyma.02g010600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g011000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g01420 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g011000
>Glyma.10g011000.1 sequence-type=CDS polypeptide=Glyma.10g011000.1.p locus=Glyma.10g011000 ID=Glyma.10g011000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAATTGTTCAGAGCGTTTTTCTTCAAGTCTCTTTTCTTCTTTTGGTACCGTTTTCTCTTTAGGCAACTAAGGAACCTAATCCGTTTCCACAGAACCATAAGCAATTCTTTTTCGGGTGCAACACCAACACAGTTTAATAAGTACCAGAAATTCCCCTCTCTAATCCACCGATCAGACCTCAACGATCACATGTTGATCTTTGATGTCGAAAACGCGTTGTTGAAATCCTCTTCTTTGTTCCCATATTTCATGCTCGTGGCCTTTGAGGCAGGGGGGCTTGTTAGAGCCATAGTTTTGGTTCTTCTATACCCTTTTGTTTGTGTCGTAGGAAAAGAGATGGGGTTGAAGATAATGGTCATGGCATGCTTCTTCGGGATCAAAGCATCGAGCTTCAGAGTTGGAAGGTCCGTTTTGCCCAAATTCTTCTTGGAGGACGTTGGTGCAGAAATGTTTGAGGCACTCAAAAAAGGAGGGAAGACAGTGGGAGTTACCAATTTACCCCACGTGATGGTGGAAAGCTTCTTGAGAGAGTATTTGGACATTGATTTCGTTGTGGGAAGGGAGATGAAAGTTTTCTGCGGATACTACGTGGGGTTGATGGAGGACACAAAAACTATGCATGCCTTGGAGCTAGTAAAAGAAGGGAAAGGATGCTCCGACATGATCGGAATCACAAGGTTTCGCAACATTCGCGACCATGATCTATTTTTCTCTCATTGCAAGGAAGTGTACGTGGTGTCAGAAGCAGACAAGAGGAGCTGGCAAAAGCTAGCAAGGGAGAGATACCCCAGAGGCCTTATCTTTCACGATGGAAGATTGGCGCTAAGACCCACTCCAGCGGAGTCCATAGCAATGTTGATGTGGTTCCCCTATGCAATCATCCTCTCTGTTATTCGCATTTCCCTGGCTCTCTCTCTTCCATTTACCATCTCAACCCCCTTGTTGGTCTTTAGTGGGATCCGTCTCACCACAACAACATCAGCACCCACACGCCCCCACAACATTAAACAAAACAACAAGGGCATTGTTGGTAATCTCTACGTGTGTAACCACAGAACATTATTAGACCCGCTCTACATATCTTTCTCATTGCAAAAAAACTTAACCGCCGTCACGTACAGTTTGAGTAGGATGTCTGAGATCCTTGCCCCAATCAAAACGGTGCGGTTAACTAGAAACCGCGACGAGGATGCGAAAATGATGAAAAATTTGCTGGGGCAAGGGGACCTGGTGGTTTGTCCTGAAGGGACCACATGTAGAGAACCTTATTTATTGAGGTTCAGCCCTCTGTTCTCAGAGATGTGCGATGAGATTGTCCCCGTTGCAGTTGATTCCCACGTTAGTATGTTCCACGGAACCACTGCTGGTGGACTTAAGTGCTTGGACCCATTCTTCTTTCTCATGAACCCCGAGCCTGTTTACACGGTTCAGCTGCTCAACCATGTTTTCCCTTCCCAATTACTATCATCTCACACCAGTAACACCAGCGTTCTTGACCATCAAACTTCGAGGTTTCATGTGGCTAATAGGGTCCAAACACAGATTGGTACCGCGTTGGGGTTTGAGTGCACTAAACTCACACGAAAGGACAAGTACTTGATGTTAGCTGGTAATGAAGGCATTGTTAATTCCAACACCAAATGCAAAAGCAAGTCCAAGTCGTAG
Predicted protein sequences of Glyma.10g011000
>Glyma.10g011000.1.p sequence-type=predicted peptide transcript=Glyma.10g011000.1 locus=Glyma.10g011000 ID=Glyma.10g011000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKLFRAFFFKSLFFFWYRFLFRQLRNLIRFHRTISNSFSGATPTQFNKYQKFPSLIHRSDLNDHMLIFDVENALLKSSSLFPYFMLVAFEAGGLVRAIVLVLLYPFVCVVGKEMGLKIMVMACFFGIKASSFRVGRSVLPKFFLEDVGAEMFEALKKGGKTVGVTNLPHVMVESFLREYLDIDFVVGREMKVFCGYYVGLMEDTKTMHALELVKEGKGCSDMIGITRFRNIRDHDLFFSHCKEVYVVSEADKRSWQKLARERYPRGLIFHDGRLALRPTPAESIAMLMWFPYAIILSVIRISLALSLPFTISTPLLVFSGIRLTTTTSAPTRPHNIKQNNKGIVGNLYVCNHRTLLDPLYISFSLQKNLTAVTYSLSRMSEILAPIKTVRLTRNRDEDAKMMKNLLGQGDLVVCPEGTTCREPYLLRFSPLFSEMCDEIVPVAVDSHVSMFHGTTAGGLKCLDPFFFLMNPEPVYTVQLLNHVFPSQLLSSHTSNTSVLDHQTSRFHVANRVQTQIGTALGFECTKLTRKDKYLMLAGNEGIVNSNTKCKSKSKS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo