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Report for Sequence Feature Glyma.10g010500

Feature Type:gene_model
Chromosome:Gm10
Start:990687
stop:994015
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g010500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19730.1AT Pectin lyase-like superfamily protein JGI N/AIEA
GO:0042545GO-bp cell wall modification EnsemblGenomesN/AIEA
GO:0042545GO-bp cell wall modification JGI N/AIEA
GO:0045490GO-bp pectin catabolic process EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall EnsemblGenomesN/AIEA
GO:0005618GO-cc cell wall JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0030599GO-mf pectinesterase activity EnsemblGenomesN/AIEA
GO:0030599GO-mf pectinesterase activity JGI N/AIEA
GO:0045330GO-mf aspartyl esterase activity EnsemblGenomesN/AIEA
PF01095PFAM Pectinesterase JGI N/AIEA
PWY-1081SoyCyc9 homogalacturonan degradation Plant Metabolic Network ISS
GN7V-48735SoyCyc9-rxn pectinesterase Plant Metabolic Network ISS

Expression Patterns of Glyma.10g010500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g010500 not represented in the dataset
Glyma.10g010500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g010500
ParalogEvidenceComments
Glyma.02g009900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g010500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g01355 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g010500
>Glyma.10g010500.1 sequence-type=CDS polypeptide=Glyma.10g010500.1.p locus=Glyma.10g010500 ID=Glyma.10g010500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGCCAAATCCCATTTCCAAGTCATAATTCTATTTCTTCTTTCATTATTATACATTACATCCAGCTATACTCATACACAGGCTGATTTTGACAAATGGGTATCAAGGAATGTCAAGAATTATCAGAAAAGGAACATTTTGGAAGCCAAATTGAAAGTCGCTGCACCTGGTCCAGATTTGAAGCTGACGCAGGCTGAGAATAACAAAACCATTACAGAAGCTCTTAATAGCATTCCACCACGCAACACAAGGAGAGTTATAGTATCGATCGCACCGGGTGTTTATAGCATCTGTCTCCGGAAGGACGTTCCAGAGTGCAACTGTGGTGTAGATGCGAGCCATTTTGTGGCCATCAACATAAAATTTGAGGGATCTCAAGACACTCTCTATGATCACAAAGGCCTTCATTACTTCAACAACTGCTCTATTCAAGGTCCCTTTACCAGGAAGGTGGCTTCCATCACTGCTCAAAAGCGTACCAATTCGTCATTGGAGAGTGGATTCTCATTCAAAAACTGCACAGTAATAGGTAGTGGGCAGGTTTATCTCGGAAGAGCATGGGGAGATTATTCCAGAGTTGTTTTCTCTTACACCTTCATGGACAACATAGTTCTCGCCAAAGGATGGAGTGATTGGGGTGACCAAAAGCGTGACTCGAGAGTATATTATGGAGAATACAAGTGTAGTGGACCAGGAGCTAACTTGGCTGGAAGAGTGCCATGGACACGGGTGCTTACGGATGAAGAGGCCAAGCCTTTTATTGAGATGCAATTCATTGAAGGGGACACTTGGCTTATTAGCCCCTAA
Predicted protein sequences of Glyma.10g010500
>Glyma.10g010500.1.p sequence-type=predicted peptide transcript=Glyma.10g010500.1 locus=Glyma.10g010500 ID=Glyma.10g010500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVAKSHFQVIILFLLSLLYITSSYTHTQADFDKWVSRNVKNYQKRNILEAKLKVAAPGPDLKLTQAENNKTITEALNSIPPRNTRRVIVSIAPGVYSICLRKDVPECNCGVDASHFVAINIKFEGSQDTLYDHKGLHYFNNCSIQGPFTRKVASITAQKRTNSSLESGFSFKNCTVIGSGQVYLGRAWGDYSRVVFSYTFMDNIVLAKGWSDWGDQKRDSRVYYGEYKCSGPGANLAGRVPWTRVLTDEEAKPFIEMQFIEGDTWLISP*






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