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Report for Sequence Feature Glyma.10g005600

Feature Type:gene_model
Chromosome:Gm10
Start:560190
stop:573484
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g005600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14350.3AT AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0018105GO-bp peptidyl-serine phosphorylation EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG0605 KOG NDR and related serine/threonine kinases JGI N/AIEA
PTHR24358Panther SERINE/THREONINE-PROTEIN KINASE 38 JGI N/AIEA
PTHR24358:SF32Panther JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA
PF00433PFAM Protein kinase C terminal domain JGI N/AIEA

Expression Patterns of Glyma.10g005600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g005600
ParalogEvidenceComments
Glyma.02g003200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g005600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g00830 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g005600
>Glyma.10g005600.2 sequence-type=transcript locus=Glyma.10g005600 ID=Glyma.10g005600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTATCATCCCATCAAACCTTATTACATTATAAATATAAATAAATATTATTTTAAAAAGTGCcttacaactttcgatatgaactttcaactatgaactttcaactCACTCGAACAAAACAACAAAAAGCTTAAAACCAGCAAATTGAATCGCTGcatctcattcacatcactgtcaccatcatcaaccacaacaccaacaccaacaacGCTAACTGCTtctctacgctctctctctctccctctctctcAACTTCCAGATTCAAGAAGTAGCAGTTACTGTGCCTTTGGTTCTTCTGAAATATAAAAACGGCAGCTTGAGAGGTGAAGAAATAAAATGGAAACTACAAGACGGTGGTTTAGTAAGTTCAAGTCAAATGATAAAATGAAGTCTGAAAAGAACAAAGAAACTACAGGCGTGACAAAAGAAGGGTCAAGACCCCCAACAAATGAAGAAGCACCTTCAAATGTAACCAAACAGAGGGTTGAAGCTGCAAAGCAGTATATCGAAAATCATTATAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAACAACACAACTTGCTTCAGCATTTGGAGAAAAAGGAGAGGGAAATCATGCGCCTTCAGAGACATAAGATGGGGGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAGGCCACTGGCCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTACGAAGAGGCCAGGTTGAACATGTCAAAGCTGAGAGAAATCTACTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATTATCAGATTTTGGATTATGTAAACCGCTAGACTGCAGTAACCTTCAAGAAAAGGACTTCTCTGTTGGAATGAACAGAAGTGGAGCCCTCCAAAGTGATGGGCGTCCTGTGGCTCCTAAACGAACCCAACAGGAACAACTGCAGCATTGGCAGAAAAATCGACGAATGCTTGCCTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTTCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGATAGTAAACTGGAGAACTACTTTAAAGTTTCCAGAAGAAGCTAAACTTTCAGCAGAGGCAAAGGATCTTATTTGTAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTATACCAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAGATGCTGCCTTCTAAAGATATTAACTTCGTCGGCTACACATACAAGAATTTTGAAATCGTGAATGATCCTGAAATACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGTCACTATTTGATGATGAATCAGCTACGGCTGCCAATCAACCTGTCAGAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAATGATCCACACCAATATATTACAGGACTTCTTGATGGCCATGGTCACAACCAAATGTTGATGACTACTGATTGTTATACTTTTTCTCACATTCTTTTGTTAGATTGGAGTTGATGGATTTGGAAGCCAGGTCCCTGAAATTTCTGGTTTTTGGATGACTGATTTTTTTGGCTGACTGGGATATTTTCCGTGTAGAAAAATCTTTTAAGGTGTATATTCTTCAATTCACCTTCTATCAAACTGCAATGTGTTAAATATCATAGTTTTTTTTCCTCTTGTAATTGAGTTACTGTTGAAAGATGAAGTGCTGACAAGGATGTGCAATTCACACATTTTTGTACAGTATATAGAGATTGATCGGTTTGTAGGTTAACATTTTCTGTTATGTGACATTAGGGTCCAAACTTTACAACTGAAATCCTGCCTTTGAGTTT
Coding sequences of Glyma.10g005600
>Glyma.10g005600.1 sequence-type=CDS polypeptide=Glyma.10g005600.1.p locus=Glyma.10g005600 ID=Glyma.10g005600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAACTACAAGACGGTGGTTTAGTAAGTTCAAGTCAAATGATAAAATGAAGTCTGAAAAGAACAAAGAAACTACAGGCGTGACAAAAGAAGGGTCAAGACCCCCAACAAATGAAGAAGCACCTTCAAATGTAACCAAACAGAGGGTTGAAGCTGCAAAGCAGTATATCGAAAATCATTATAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAACAACACAACTTGCTTCAGCATTTGGAGAAAAAGGAGAGGGAAATCATGCGCCTTCAGAGACATAAGATGGGGGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAGGCCACTGGCCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTACGAAGAGGCCAGGTTGAACATGTCAAAGCTGAGAGAAATCTACTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATTATCAGATTTTGGATTATGTAAACCGCTAGACTGCAGTAACCTTCAAGAAAAGGACTTCTCTGTTGGAATGAACAGAAGTGGAGCCCTCCAAAGTGATGGGCGTCCTGTGGCTCCTAAACGAACCCAACAGGAACAACTGCAGCATTGGCAGAAAAATCGACGAATGCTTGCCTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTTCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGATAGTAAACTGGAGAACTACTTTAAAGTTTCCAGAAGAAGCTAAACTTTCAGCAGAGGCAAAGGATCTTATTTGTAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTATACCAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAGATGCTGCCTTCTAAAGATATTAACTTCGTCGGCTACACATACAAGAATTTTGAAATCGTGAATGATCCTGAAATACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGTCACTATTTGATGATGAATCAGCTACGGCTGCCAATCAACCTGTCAGAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAATGA

>Glyma.10g005600.2 sequence-type=CDS polypeptide=Glyma.10g005600.2.p locus=Glyma.10g005600 ID=Glyma.10g005600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAACTACAAGACGGTGGTTTAGTAAGTTCAAGTCAAATGATAAAATGAAGTCTGAAAAGAACAAAGAAACTACAGGCGTGACAAAAGAAGGGTCAAGACCCCCAACAAATGAAGAAGCACCTTCAAATGTAACCAAACAGAGGGTTGAAGCTGCAAAGCAGTATATCGAAAATCATTATAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAACAACACAACTTGCTTCAGCATTTGGAGAAAAAGGAGAGGGAAATCATGCGCCTTCAGAGACATAAGATGGGGGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAGGCCACTGGCCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTACGAAGAGGCCAGGTTGAACATGTCAAAGCTGAGAGAAATCTACTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATTATCAGATTTTGGATTATGTAAACCGCTAGACTGCAGTAACCTTCAAGAAAAGGACTTCTCTGTTGGAATGAACAGAAGTGGAGCCCTCCAAAGTGATGGGCGTCCTGTGGCTCCTAAACGAACCCAACAGGAACAACTGCAGCATTGGCAGAAAAATCGACGAATGCTTGCCTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTTCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGATAGTAAACTGGAGAACTACTTTAAAGTTTCCAGAAGAAGCTAAACTTTCAGCAGAGGCAAAGGATCTTATTTGTAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTATACCAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAGATGCTGCCTTCTAAAGATATTAACTTCGTCGGCTACACATACAAGAATTTTGAAATCGTGAATGATCCTGAAATACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGTCACTATTTGATGATGAATCAGCTACGGCTGCCAATCAACCTGTCAGAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAATGA
Predicted protein sequences of Glyma.10g005600
>Glyma.10g005600.1.p sequence-type=predicted peptide transcript=Glyma.10g005600.1 locus=Glyma.10g005600 ID=Glyma.10g005600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
METTRRWFSKFKSNDKMKSEKNKETTGVTKEGSRPPTNEEAPSNVTKQRVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQHNLLQHLEKKEREIMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGMNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTTLKFPEEAKLSAEAKDLICRLLCNVEQRLGTKGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNDELDTQNFEKFEEADKQTVPSSKAGPWRKMLPSKDINFVGYTYKNFEIVNDPEIPGIAELKKKSTKPKRPSIKSLFDDESATAANQPVRGSFLNLLPPQMEVPEKSESQ*

>Glyma.10g005600.2.p sequence-type=predicted peptide transcript=Glyma.10g005600.2 locus=Glyma.10g005600 ID=Glyma.10g005600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
METTRRWFSKFKSNDKMKSEKNKETTGVTKEGSRPPTNEEAPSNVTKQRVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQHNLLQHLEKKEREIMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGMNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTTLKFPEEAKLSAEAKDLICRLLCNVEQRLGTKGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNDELDTQNFEKFEEADKQTVPSSKAGPWRKMLPSKDINFVGYTYKNFEIVNDPEIPGIAELKKKSTKPKRPSIKSLFDDESATAANQPVRGSFLNLLPPQMEVPEKSESQ*






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