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Report for Sequence Feature Glyma.10g005200

Feature Type:gene_model
Chromosome:Gm10
Start:524543
stop:528345
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g005200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23490.1AT cyanase JGI N/AIEA
GO:0009439GO-bp cyanate metabolic process EnsemblGenomesN/AIEA
GO:0009439GO-bp cyanate metabolic process JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0008824GO-mf cyanate hydratase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
PF02560PFAM Cyanate lyase C-terminal domain JGI N/AIEA
CYANCAT-PWYSoyCyc9 cyanate degradation Plant Metabolic Network ISS
GN7V-49944SoyCyc9-rxn cyanase Plant Metabolic Network ISS

Proteins Associated with Glyma.10g005200
LocusGene SymbolProtein Name
CYN Cyanate hydratase

Expression Patterns of Glyma.10g005200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10g005200 not represented in the dataset
Glyma.10g005200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g005200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g00790 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g005200
>Glyma.10g005200.1 sequence-type=CDS polypeptide=Glyma.10g005200.1.p locus=Glyma.10g005200 ID=Glyma.10g005200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGCAGAAGAAGGCAAAGATAGTGGCAGAGCTCCAAGCTGTGAAGCACAACAGTGGCAAGTCCTACAATCAGTTAGCGGAGGAGACTGGACTCACCAACGTCTATGTTGCTCAGCTTCTCAGGAGACAGGCTCAGCTCAATCCCCAAACTGCCCCTCTACTTCGGGCAGCGCTGCCCGACCTGCCCCAAGACCTTGTTTCTGAGATGATGAGACCCCCTTTGAGGTCTTATGACCCTAATCTCATCCAAGACCCCACTGTCTATAGGTTGAATGAAGCTGTTATGCATTTTGGGGAGAGCATCAAAGAAATAATCAATGAGGAGTTTGGTGATGGGATCATGTCAGCAATAGATTTCTACTGCTCGGTTGATAAAATTAAAGGAGTAGATGGGAAGGATCGTGTGGTATTGACATTTGATGGGAAATATTTGCCACATTCAGAACAGAAATCTGAGCACATGGTTTCAAGAACAAGGCCACTGGGAAAACAGTGA
Predicted protein sequences of Glyma.10g005200
>Glyma.10g005200.1.p sequence-type=predicted peptide transcript=Glyma.10g005200.1 locus=Glyma.10g005200 ID=Glyma.10g005200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEQKKAKIVAELQAVKHNSGKSYNQLAEETGLTNVYVAQLLRRQAQLNPQTAPLLRAALPDLPQDLVSEMMRPPLRSYDPNLIQDPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSVDKIKGVDGKDRVVLTFDGKYLPHSEQKSEHMVSRTRPLGKQ*






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