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Report for Sequence Feature Glyma.10g003300

Feature Type:gene_model
Chromosome:Gm10
Start:325756
stop:326638
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g003300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G17570.1AT Undecaprenyl pyrophosphate synthetase family protein JGI N/AIEA
GO:0016094GO-bp polyprenol biosynthetic process EnsemblGenomesN/AIEA
GO:0002094GO-mf polyprenyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016765GO-mf transferase activity, transferring alkyl or aryl (other than methyl) groups EnsemblGenomesN/AIEA
GO:0016765GO-mf transferase activity, transferring alkyl or aryl (other than methyl) groups JGI N/AIEA
PTHR10291Panther DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE JGI N/AIEA
PF01255PFAM Putative undecaprenyl diphosphate synthase JGI N/AIEA
GN7V-62562SoyCyc9-rxn rubber cis-polyprenylcistransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.10g003300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g003300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g00580 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g003300
>Glyma.10g003300.1 sequence-type=CDS polypeptide=Glyma.10g003300.1.p locus=Glyma.10g003300 ID=Glyma.10g003300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGCCATTTTATCTATGGGTCCTGTGCCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAGAAACATGGAAGAAGGTGATGGCCATAAGGCTGGATTTACTGCTCTCATGTCCATACTTAGATACTGTTATGAATTGGGAGTGAAGAGGCCTAAAGAGGTTCAGTCCTTGATGGAATTGATGCGAGAAAAGATTGAGGAGTTGCTTAAACAAGAAAGCCTTATTAATGAATATGGTGTTAGATTACATTTCATTGGAGACATGCAACTATTGACTGAGCCTGTCCGGGTTGCTTTGGAAAAAGCAATGAGAGTTACTGCCCACAACAACCAGAGAGTTCTTTTGATTTGTGTAGCCTATACTTCTCGTCATGAGATTGTGCATGCTGTTCAAGAATTCTTGTCAAAAGAAGCAAAGCTTACAAATGATGCATTTGCAAGAATTGATCTGGGCCTGAAAGGAAACGGTTTTGATTTGCTTTTCCAAGATTCATGTAAAGACTATCTAAATGCAACCAAAGCTTGTAGTAGTGTACCTAACAGAGTGGAAGGTGCCGGAGAGAAAGATGGCATGTTGGAGCATACTGTTGAAAAACATAGCGGTAACAATAGTGAAGCTGAAATCACATCATGCAATGAGATGGTTGAAATGACTGAAGAGGGTGAGGTTCCTTTTGTAAAACTGGTTGATATTGAGAAGAACATGTACATGGCAGTGGCACCTGACCCAGACATCTTGATCCGAACTTCTGGAGAGGCTCAGACTCAGCAATTTTCTTCTATGGCAGACTAG
Predicted protein sequences of Glyma.10g003300
>Glyma.10g003300.1.p sequence-type=predicted peptide transcript=Glyma.10g003300.1 locus=Glyma.10g003300 ID=Glyma.10g003300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFAILSMGPVPSHIAFIMDGNRRYAKKRNMEEGDGHKAGFTALMSILRYCYELGVKRPKEVQSLMELMREKIEELLKQESLINEYGVRLHFIGDMQLLTEPVRVALEKAMRVTAHNNQRVLLICVAYTSRHEIVHAVQEFLSKEAKLTNDAFARIDLGLKGNGFDLLFQDSCKDYLNATKACSSVPNRVEGAGEKDGMLEHTVEKHSGNNSEAEITSCNEMVEMTEEGEVPFVKLVDIEKNMYMAVAPDPDILIRTSGEAQTQQFSSMAD*






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