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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G32320.1 | AT | tRNAHis guanylyltransferase | JGI | N/A | IEA |
| GO:0006400 | GO-bp | tRNA modification | EnsemblGenomes | N/A | IEA |
| GO:0006400 | GO-bp | tRNA modification | JGI | N/A | IEA |
| GO:0008033 | GO-bp | tRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0099116 | GO-bp | tRNA 5'-end processing | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | JGI | N/A | IEA |
| GO:0008193 | GO-mf | tRNA guanylyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008193 | GO-mf | tRNA guanylyltransferase activity | JGI | N/A | IEA |
| KOG2721 | KOG | Uncharacterized conserved protein | JGI | N/A | IEA |
| PTHR12729 | Panther | UNCHARACTERIZED | JGI | N/A | IEA |
| PF04446 | PFAM | tRNAHis guanylyltransferase | JGI | N/A | IEA |
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Glyma.10g001600 not represented in the dataset |
Glyma.10g001600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g00420 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g001600.1 sequence-type=CDS polypeptide=Glyma.10g001600.1.p locus=Glyma.10g001600 ID=Glyma.10g001600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAAACAGCAAATATGAGTATGTCAAGTGTTTTGAAGTTGAGGATGAGGCCATGTTTCCCAATATCATCCTTGTTTGGATCAAGGCTAGTAAACTCCATAAACCTCATGATTCAAATACCTTGAAATTGATGAACTCTTGTGCTGTTGAAGTTCTTGAAGAGTATGCAGATGTAGTCTTTGCATATGGGTTCAGTGATGAGTATACTTTTGTTTTCAAGAAGACCTCCAAGTTCCACGAAAGGCGTGCAAGCAAAGTGCTATCCATCATTACTTCTTTTTTCTCATCTGTCTTTGTGAGAAAATGGGATGAATTCTTTCCACACAAGGAACTACAATGTCATCCTTCCCTACATGGGCGGGTCATAGCTTGTGCGTCCATAAAAGCTCTCCAAGCTTATCTTTTGTGGCGGCAGACTATTTGTCATTTGAGTAATCAACATGAGCAATGCCTTTGGCGTCTTGTTGAACGTGGAATGAATGAGAAGGAAGCATGGGATTTCATCAAGGGTTTTGAAAAAAGTGATCTAAACAATCTTTTATTTGACGAGTTCAACGTCAATTACAATACACTAGAGCCGATACTCCGCCAAGGGTCTTGTGTTCTGAAGACAACGGGTGAGGATACTGTGAAGTACACAGATAATGGTGCTCCAATTAAAAGGCACAGAAGGAAGATAGTCACGGTGCATTCCAAGAAAATAGCTAGCAAGAGATTTTGGAATGAGCATACTGTTCTTTTGAAGGACCTTGGTGGTTTTGTTGAAGAAATTAACAATGTGACTCCAGAGTATGTGAGGTCCTTTGAATTTGATAGCAAATTGATGCCATGTACATGGATTGTAGTTCGAATAGATGGGTGCCACTTCCACAGATTTTCTGAGATACATGAATTTGTGAAGCCAAATGATGATAGAGCTCTTAACTTGATGAATTTGTGTGCAGTCGCTGTCTTAGAAAAGTTTTGGGAGGATATAGTCTTTGCCTATGGGGTTAGTGACGAGTATAGCTTTATTCTTAAGAAAACCACTAATCTTTATCAAAGGAGAGCTAATACAATAATTTCAGCTATTGTGTCTTTCTTCACATCCACTTATGTGATGAGATGGAAAGATTTCTTCCCACAAAGTGAGTTAAAGTACCCTCCTTCCTTTGATGGACGAGCTGTGTGCTATCCATCTACCGAGATTCTACGGGACTACCTTTCATGGAGACAAGTGGATTGTCACATCAACAATCAATATAACTCTTGTTTCTGGAAGTTAGTTGCATCTGGAAAAAGCAAAAGGGAAGCCCAGAACAGTTTAAAAGGTGGTCAGTTGCAAAAGAAAATTGAGGAATTGGCTATTGACTACAATAAATTACCAGTCATGTACCGACAAGGATCCTCAATTTATAGGGACAAGGTAGACAATGTTCTAATTCATCAGGAGAATGGAGAGTCTCCTGAAAATTATGGAAAGGTTATTGTAGGACATTTTGACATCATTGGACCAACCTTTTGGTTGGAACACCCAAACATCCTTGATGAATAG
>Glyma.10g001600.1.p sequence-type=predicted peptide transcript=Glyma.10g001600.1 locus=Glyma.10g001600 ID=Glyma.10g001600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MANSKYEYVKCFEVEDEAMFPNIILVWIKASKLHKPHDSNTLKLMNSCAVEVLEEYADVVFAYGFSDEYTFVFKKTSKFHERRASKVLSIITSFFSSVFVRKWDEFFPHKELQCHPSLHGRVIACASIKALQAYLLWRQTICHLSNQHEQCLWRLVERGMNEKEAWDFIKGFEKSDLNNLLFDEFNVNYNTLEPILRQGSCVLKTTGEDTVKYTDNGAPIKRHRRKIVTVHSKKIASKRFWNEHTVLLKDLGGFVEEINNVTPEYVRSFEFDSKLMPCTWIVVRIDGCHFHRFSEIHEFVKPNDDRALNLMNLCAVAVLEKFWEDIVFAYGVSDEYSFILKKTTNLYQRRANTIISAIVSFFTSTYVMRWKDFFPQSELKYPPSFDGRAVCYPSTEILRDYLSWRQVDCHINNQYNSCFWKLVASGKSKREAQNSLKGGQLQKKIEELAIDYNKLPVMYRQGSSIYRDKVDNVLIHQENGESPENYGKVIVGHFDIIGPTFWLEHPNILDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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