SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g001200

Feature Type:gene_model
Chromosome:Gm10
Start:133342
stop:140198
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g001200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02680.1AT TBP-associated factor 13 JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006366GO-bp transcription from RNA polymerase II promoter JGI N/AIEA
GO:0005669GO-cc transcription factor TFIID complex EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003712GO-mf transcription cofactor activity EnsemblGenomesN/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
KOG3901 KOG Transcription initiation factor IID subunit JGI N/AIEA
PTHR11380Panther TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED JGI N/AIEA
PTHR11380:SF5Panther TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 13 JGI N/AIEA
PF02269PFAM Transcription initiation factor IID, 18kD subunit JGI N/AIEA

Expression Patterns of Glyma.10g001200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g001200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g00360 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10g001200
>Glyma.10g001200.2 sequence-type=transcript locus=Glyma.10g001200 ID=Glyma.10g001200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTATAAATATTGGACCGAACAGAAGAGAGGACACAGCGCCGCGCCGCCTCAACAACTGAAACAAACACTATCCCTAATCCCTTTCTTCCTCTCTGCACGCTCTTGCCTCCTCCGATCTCAGAACAGAACCTACGCACTGCATTGGAAGATACAAGAATATCATCAGTTTCTCCTATTCATTAACTCCAGTTACTCACTGAAGATAACATTGGAAGCATTGGGCAATAAAAATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGGTTTTTGAGGTGGATGACTCAGTTGAAGGATGAATAATGAAGTTACTGAAATGCACTAATGACTCAGCTAACCTGTTCTTTGTTGGTTATGATGTGTTTCGCTTTTTTGAGGATGCTCTAGAAAATTTGTTTTATCTTCGTACTCAAATATAATGTGTACATAATCTTAAAATCAACTTGTGCCTTATACGCATGTTTTTGTTTATATTTAAGAAATATATATATATTATTTGTAAAATTACCCAATG

>Glyma.10g001200.3 sequence-type=transcript locus=Glyma.10g001200 ID=Glyma.10g001200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAACAGAAGAGAGGACACAGCGCCGCGCCGCCTCAACAACTGAAACAAACACTATCCCTAATCCCTTTCTTCCTCTCTGCACGCTCTTGCCTCCTCCGATCTCAGTACTAGCCCATGCGATTGTAACCGCTGTTGCACTTGCTTCTTCACCTTCTTCACACTATTCTCTCACTCACTCTTCTTCGTTTCGGTTCTTCAGATCTCTTCTCCGATTCCAGAACAGAACCTACGCACTGCATTGGAAGATACAAGAATATCATCAGTTTCTCCTATTCATTAACTCCAGTTACTCACTGAAGATAACATTGGAAGCATTGGGCAATAAAAATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGGTTTTTGAGGTGGATGACTCAGTTGAAGGATGAATAATGAAGTTACTGAAATGCACTAATGACTCAGCTAACCTGTTCTTTGTTGGTTATGATGTGTTTCGCTTTTTTGAGGATGCTCTAGAAAATTTGTTTTATCTTCGTACTCAAATATAATGTGTACATAATCTTAAAATCAACTTGTGCCTTATACGCATGTTTTTGTTTATATTTAAGAAATATATATATATTATTTGTAAAATTACCCAATG

>Glyma.10g001200.4 sequence-type=transcript locus=Glyma.10g001200 ID=Glyma.10g001200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGCCGCCTCAACAACTGAAACAAACACTATCCCTAATCCCTTTCTTCCTCTCTGCACGCTCTTGCCTCCTCCGATCTCAGGGTTTCATTATGCCATACCACTGAAGAACGAAGTTTATCTCTCTCTTGTGACTTGTGAGCAATTCAAATTGCGGAGAACAGAACCTACGCACTGCATTGGAAGATACAAGAATATCATCAGTTTCTCCTATTCATTAACTCCAGTTACTCACTGAAGATAACATTGGAAGCATTGGGCAATAAAAATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGGTTTTTGAGGTGGATGACTCAGTTGAAGGATGAATAATGAAGTTACTGAAATGCACTAATGACTCAGCTAACCTGTTCTTTGTTGGTTATGATGTGTTTCGCTTTTTTGAGGATGCTCTAGAAAATTTGTTTTATCTTCGTACTCAAATATAATGTGTACATAATCTTAAAATCAACTTGTGCCTTATACGCATGTTTTTGTTTATATTTAAGAAATATATATATATTATTTGTAAAATTACCCAATG

>Glyma.10g001200.5 sequence-type=transcript locus=Glyma.10g001200 ID=Glyma.10g001200.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCCTCAACAACTGAAACAAACACTATCCCTAATCCCTTTCTTCCTCTCTGCACGCTCTTGCCTCCTCCGATCTCAGTACTAGCCCATGCGATTGTAACCGCTGTTGCACTTGCTTCTTCACCTTCTTCACACTATTCTCTCACTCACTCTTCTTCGTTTCGGTTCTTCAGATCTCTTCTCCGATTCCAGAGACTCAACAAATTGCTTCGCCTTTGGCTCTAACGTGACTAGCAAATCATGTTTCCTCATTCTCGCCGAGAGTGCGTTCTCTCTCTCTGTTCAGACTTCGGAGTACGCTTCCTCTCTCACAGTTGGTTTCATTATGCCATACCACTGAAGAACGAAGTTTATCTCTCTCTTGTGACTTGTGAGCAATTCAAATTGCGGAGAACCTACGCACTGCATTGGAAGATACAAGAATATCATCAGTTTCTCCTATTCATTAACTCCAGTTACTCACTGAAGATAACATTGGAAGCATTGGGCAATAAAAATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGGTTTTTGAGGTGGATGACTCAGTTGAAGGATGAATAATGAAGTTACTGAAATGCACTAATGACTCAGCTAACCTGTTCTTTGTTGGTTATGATGTGTTTCGCTTTTTTGAGGATGCTCTAGAAAATTTGTTTTATCTTCGTACTCAAATATAATGTGTACATAATCTTAAAATCAACTTGTGCCTTATACGCATGTTTTTGTTTATATTTAAGAAATATATATATATTATTTGTAAAATTACCCAATG
Coding sequences of Glyma.10g001200
>Glyma.10g001200.1 sequence-type=CDS polypeptide=Glyma.10g001200.1.p locus=Glyma.10g001200 ID=Glyma.10g001200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGGTTTTTGAGGTGGATGACTCAGTTGAAGGATGA

>Glyma.10g001200.2 sequence-type=CDS polypeptide=Glyma.10g001200.2.p locus=Glyma.10g001200 ID=Glyma.10g001200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGGTTTTTGAGGTGGATGACTCAGTTGAAGGATGA

>Glyma.10g001200.3 sequence-type=CDS polypeptide=Glyma.10g001200.3.p locus=Glyma.10g001200 ID=Glyma.10g001200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGGTTTTTGAGGTGGATGACTCAGTTGAAGGATGA

>Glyma.10g001200.4 sequence-type=CDS polypeptide=Glyma.10g001200.4.p locus=Glyma.10g001200 ID=Glyma.10g001200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGGTTTTTGAGGTGGATGACTCAGTTGAAGGATGA

>Glyma.10g001200.5 sequence-type=CDS polypeptide=Glyma.10g001200.5.p locus=Glyma.10g001200 ID=Glyma.10g001200.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAGCAGCTTCCTCACAACCATCAGAAACTTCGTCTAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGACGAAGAGAAACTGAGGAAGGTTTTTGAGGTGGATGACTCAGTTGAAGGATGA
Predicted protein sequences of Glyma.10g001200
>Glyma.10g001200.1.p sequence-type=predicted peptide transcript=Glyma.10g001200.1 locus=Glyma.10g001200 ID=Glyma.10g001200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNSSAGTSSKPRAASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLSMNEELKQARKVFESDEEKLRKVFEVDDSVEG*

>Glyma.10g001200.2.p sequence-type=predicted peptide transcript=Glyma.10g001200.2 locus=Glyma.10g001200 ID=Glyma.10g001200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNSSAGTSSKPRAASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLSMNEELKQARKVFESDEEKLRKVFEVDDSVEG*

>Glyma.10g001200.3.p sequence-type=predicted peptide transcript=Glyma.10g001200.3 locus=Glyma.10g001200 ID=Glyma.10g001200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNSSAGTSSKPRAASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLSMNEELKQARKVFESDEEKLRKVFEVDDSVEG*

>Glyma.10g001200.4.p sequence-type=predicted peptide transcript=Glyma.10g001200.4 locus=Glyma.10g001200 ID=Glyma.10g001200.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNSSAGTSSKPRAASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLSMNEELKQARKVFESDEEKLRKVFEVDDSVEG*

>Glyma.10g001200.5.p sequence-type=predicted peptide transcript=Glyma.10g001200.5 locus=Glyma.10g001200 ID=Glyma.10g001200.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNSSAGTSSKPRAASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLSMNEELKQARKVFESDEEKLRKVFEVDDSVEG*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo