Glyma.10g000900

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Report for Sequence Feature Glyma.10g000900

Feature Type:	gene_model
Chromosome:	Gm10
Start:	102668
stop:	104250
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g000900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43750.1	AT	NAD(P)H dehydrogenase 18	JGI	N/A	IEA
GO:0006979	GO-bp	response to oxidative stress	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA

Proteins Associated with Glyma.10g000900

Locus	Gene Symbol	Protein Name
	NDH	NAD(P)H dehydrogenase

Expression Patterns of Glyma.10g000900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.10g000900

Paralog	Evidence	Comments
Glyma.02g000300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g000900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g00310	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.10g000900

Limit To All Plant Sequences

>Glyma.10g000900.2 sequence-type=transcript locus=Glyma.10g000900 ID=Glyma.10g000900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATAATAGAATCAACATAAGCTCTAAATTCAAATGTCTTGTTGTGTGGACTGTGTTATAATACGAGAAAACGGATAACAGCATCCGATAGGTAGAGAAGCAAGCAAACCATTAACCACAACACATGGCGCTATGTTCCTCACTCTCACTTGTCTCTCCCATCAAACTCACTTCCAAGTCCTTCTTATCTCCAACACCAGTCAGTTGGCATGGCATCTTGATAAAGAATAACACCTCAACAAGATTCTTGCTGAAAGCTGGTTTTAATGAGATTGAACCTGACCTCAGTGAAGATCCTAGAGACCAATTTGCCACCAATGGCGTTGACGCTGTATCTTAATTAATTGCAATGCTCTTTTTTCTTGCTTCTCTCTTTTTCTGCATGCCCTTTTGCTTGTGATGTGATGGGTTTCATTTCTTTTCTTCAGGATGATTTTGTGTATGGAATATATGATGACCACCACACTTACCATGAAGGAGAACAGAAAGGAACATTTTGGGGCTCAATTAAAGAAGAGATGGCAGAAGCAGAACCCCCCACAGGATTCCAGGGGCTTATTTCATGGCTCTTCCCACCAGCCATTGCTCTTGGGGTGTACTTCAATGTTCCGGGGGAGTACTTATACATTGGAGCAGGCATATTTACAATCATATTTTGCATTATTGAGATGGATAAACCTGATAAACCCCATCACTTTGAACCTCACATATACAATATGGAAAGGGGAGCTCGAGACAAGTTGATAAATGACTATAATACAATGAGCATATGGGAATTCAATGAAAAATATGGGGACCTATGGGATACTACTATTCCTATCAAGAAGGATGACATTATGAAGAGATAATTGTATAAAGTTCATGACTTTTATATGACAATTCTTAAATATAGTGATTTGAATTTGTTCTTTTGCGTTCCCCTTTTACTTTTCCCATTTTTCTGTTTATGTTGGATCAAGAGGTGTATATTCCCTATTTCTACCTTCTTCTTTGTCATTAAATAAGCAAAAACTTTGAGAGTGCTATTTTACTC

Coding sequences of Glyma.10g000900

Limit To All Plant Sequences

>Glyma.10g000900.1 sequence-type=CDS polypeptide=Glyma.10g000900.1.p locus=Glyma.10g000900 ID=Glyma.10g000900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCTATGTTCCTCACTCTCACTTGTCTCTCCCATCAAACTCACTTCCAAGTCCTTCTTATCTCCAACACCAGTCAGTTGGCATGGCATCTTGATAAAGAATAACACCTCAACAAGATTCTTGCTGAAAGCTGGTTTTAATGAGATTGAACCTGACCTCAGTGAAGATCCTAGAGACCAATTTGCCACCAATGGCGTTGACGCTGATGATTTTGTGTATGGAATATATGATGACCACCACACTTACCATGAAGGAGAACAGAAAGGAACATTTTGGGGCTCAATTAAAGAAGAGATGGCAGAAGCAGAACCCCCCACAGGATTCCAGGGGCTTATTTCATGGCTCTTCCCACCAGCCATTGCTCTTGGGGTGTACTTCAATGTTCCGGGGGAGTACTTATACATTGGAGCAGGCATATTTACAATCATATTTTGCATTATTGAGATGGATAAACCTGATAAACCCCATCACTTTGAACCTCACATATACAATATGGAAAGGGGAGCTCGAGACAAGTTGATAAATGACTATAATACAATGAGCATATGGGAATTCAATGAAAAATATGGGGACCTATGGGATACTACTATTCCTATCAAGAAGGATGACATTATGAAGAGATAA

>Glyma.10g000900.2 sequence-type=CDS polypeptide=Glyma.10g000900.2.p locus=Glyma.10g000900 ID=Glyma.10g000900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTTCATTTCTTTTCTTCAGGATGATTTTGTGTATGGAATATATGATGACCACCACACTTACCATGAAGGAGAACAGAAAGGAACATTTTGGGGCTCAATTAAAGAAGAGATGGCAGAAGCAGAACCCCCCACAGGATTCCAGGGGCTTATTTCATGGCTCTTCCCACCAGCCATTGCTCTTGGGGTGTACTTCAATGTTCCGGGGGAGTACTTATACATTGGAGCAGGCATATTTACAATCATATTTTGCATTATTGAGATGGATAAACCTGATAAACCCCATCACTTTGAACCTCACATATACAATATGGAAAGGGGAGCTCGAGACAAGTTGATAAATGACTATAATACAATGAGCATATGGGAATTCAATGAAAAATATGGGGACCTATGGGATACTACTATTCCTATCAAGAAGGATGACATTATGAAGAGATAA

Predicted protein sequences of Glyma.10g000900

Limit To All Plant Sequences

>Glyma.10g000900.1.p sequence-type=predicted peptide transcript=Glyma.10g000900.1 locus=Glyma.10g000900 ID=Glyma.10g000900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALCSSLSLVSPIKLTSKSFLSPTPVSWHGILIKNNTSTRFLLKAGFNEIEPDLSEDPRDQFATNGVDADDFVYGIYDDHHTYHEGEQKGTFWGSIKEEMAEAEPPTGFQGLISWLFPPAIALGVYFNVPGEYLYIGAGIFTIIFCIIEMDKPDKPHHFEPHIYNMERGARDKLINDYNTMSIWEFNEKYGDLWDTTIPIKKDDIMKR*

>Glyma.10g000900.2.p sequence-type=predicted peptide transcript=Glyma.10g000900.2 locus=Glyma.10g000900 ID=Glyma.10g000900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFISFLQDDFVYGIYDDHHTYHEGEQKGTFWGSIKEEMAEAEPPTGFQGLISWLFPPAIALGVYFNVPGEYLYIGAGIFTIIFCIIEMDKPDKPHHFEPHIYNMERGARDKLINDYNTMSIWEFNEKYGDLWDTTIPIKKDDIMKR*

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