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Report for Sequence Feature Glyma.10g000800

Feature Type:gene_model
Chromosome:Gm10
Start:92896
stop:99175
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g000800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G41500.1AT WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0017070GO-mf U6 snRNA binding EnsemblGenomesN/AIEA
GO:0030621GO-mf U4 snRNA binding EnsemblGenomesN/AIEA
KOG0272 KOG U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) JGI N/AIEA
PTHR19846Panther WD40 REPEAT PROTEIN JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA
PF08799PFAM pre-mRNA processing factor 4 (PRP4) like JGI N/AIEA

Expression Patterns of Glyma.10g000800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10g000800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g00300 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g000800
>Glyma.10g000800.1 sequence-type=CDS polypeptide=Glyma.10g000800.1.p locus=Glyma.10g000800 ID=Glyma.10g000800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGTAGAGAAGGAAAATACCACATCAGCTATTACTGCAGAACCCTCTGTATCTGCCTCTGATGGTCAAGATCCTGTTTCTTCTGTTAATGCATCTTTACCGGATCCAATACAACCTGTTATTCCACAGGTTATTGCACCTTCTGTTGTACCTCCTTTAGCTCCAATTCCTGCACTTCCTCCCCCTCGCCCTCTGGCACCGCTTCCAGTTCGGCCACCGGTCATTAGGCCACCTGTGCCACAAAATGGTGAGGTTGGATCAAGTGACTCGGATTCAGACAATGATGACTCAAATGCAAGAATTAACCAGGGGGGCGGGGAGTATGAGATATCCGAAGAGAGTAGACTGGTGAGAGAGCGGCAGGAAAAGGCAATGCAGGAGCTCATGATGAAGAGGCGTGCTGCTGCTCTTGCTGTTCCTACGAATGATATGGCCGTGCGAGCTCGGCTTCGACATCTTGGTGAACCGATAACTCTGTTTGGTGAGAGGGAGATGGAGAGACGGGACAGATTGCGGATGATTATGGCGAAGCTGGATGCAGAAGGTCAGCTGGAGAAGCTGATGAAAGCTCATGAGGAAGAAGAGGCTGCAGCTTCTGCTTCGATAGATGAGGCTGAGGAAGAACTGCAGTATCCTTTTTACACTGAAGGGTCAAAGGCTCTCCTCGATGCCAGAATTTATATTGCTAAATATTCTTTGACAAGGGCTGCATTACGAATTCAACGTGCACAGAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATGAATTGGGCATTGAAGCAGGCTGGGAATTTGAGTCTTGAATTCAGTGAAATTGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCTCAAGGGATGGAAAATGGCTTGCTACCTGTTCTCTGACAGGAGCTTCCAAGTTGTGGAGCATGCCCAAAATAAAAAAGCATTCCAGCTTTAAGGGTCACACAGAGCGTGCTACTGATGTTGCTTATTCTCCTGTTCATGATCATTTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATCAAGGATCTCTTTTGAAGACATTTGAGGGTCATCTAGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGAGACGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGCTTTCCACAATGATGGATCATTGGCTGCATCTTGTGGACTAGACTCCCTGGCTCGTGTTTGGGACCTCCGAACTGGAAGAAGTATCCTTGCACTGGAAGGTCATGTCAAACCGGTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACTCTAATTTAATTTCACAAGTTAAATTTGAGCCACAAGAAGGTTACTTTTTGGTAACTGCCTCGTATGATATGACTGCTAAGGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTGTGGATGTTCTTGGAGATGGCGGGTATATTGTTACCGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAATACGACTGACGAACAAGCTATGGATGTTGACTAA
Predicted protein sequences of Glyma.10g000800
>Glyma.10g000800.1.p sequence-type=predicted peptide transcript=Glyma.10g000800.1 locus=Glyma.10g000800 ID=Glyma.10g000800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVEKENTTSAITAEPSVSASDGQDPVSSVNASLPDPIQPVIPQVIAPSVVPPLAPIPALPPPRPLAPLPVRPPVIRPPVPQNGEVGSSDSDSDNDDSNARINQGGGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAAASASIDEAEEELQYPFYTEGSKALLDARIYIAKYSLTRAALRIQRAQRRRDDPDEDMDAEMNWALKQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWSMPKIKKHSSFKGHTERATDVAYSPVHDHLATASADRTAKYWNQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHNDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGYIVTVSHDRTIKLWSSNTTDEQAMDVD*






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