SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G41500.1 | AT | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related | JGI | N/A | IEA |
| GO:0000398 | GO-bp | mRNA splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0046540 | GO-cc | U4/U6 x U5 tri-snRNP complex | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0017070 | GO-mf | U6 snRNA binding | EnsemblGenomes | N/A | IEA |
| GO:0030621 | GO-mf | U4 snRNA binding | EnsemblGenomes | N/A | IEA |
| KOG0272 | KOG | U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) | JGI | N/A | IEA |
| PTHR19846 | Panther | WD40 REPEAT PROTEIN | JGI | N/A | IEA |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | N/A | IEA |
| PF08799 | PFAM | pre-mRNA processing factor 4 (PRP4) like | JGI | N/A | IEA |
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Glyma.10g000800 not represented in the dataset |
Glyma.10g000800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma10g00300 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.10g000800.1 sequence-type=CDS polypeptide=Glyma.10g000800.1.p locus=Glyma.10g000800 ID=Glyma.10g000800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAGTAGAGAAGGAAAATACCACATCAGCTATTACTGCAGAACCCTCTGTATCTGCCTCTGATGGTCAAGATCCTGTTTCTTCTGTTAATGCATCTTTACCGGATCCAATACAACCTGTTATTCCACAGGTTATTGCACCTTCTGTTGTACCTCCTTTAGCTCCAATTCCTGCACTTCCTCCCCCTCGCCCTCTGGCACCGCTTCCAGTTCGGCCACCGGTCATTAGGCCACCTGTGCCACAAAATGGTGAGGTTGGATCAAGTGACTCGGATTCAGACAATGATGACTCAAATGCAAGAATTAACCAGGGGGGCGGGGAGTATGAGATATCCGAAGAGAGTAGACTGGTGAGAGAGCGGCAGGAAAAGGCAATGCAGGAGCTCATGATGAAGAGGCGTGCTGCTGCTCTTGCTGTTCCTACGAATGATATGGCCGTGCGAGCTCGGCTTCGACATCTTGGTGAACCGATAACTCTGTTTGGTGAGAGGGAGATGGAGAGACGGGACAGATTGCGGATGATTATGGCGAAGCTGGATGCAGAAGGTCAGCTGGAGAAGCTGATGAAAGCTCATGAGGAAGAAGAGGCTGCAGCTTCTGCTTCGATAGATGAGGCTGAGGAAGAACTGCAGTATCCTTTTTACACTGAAGGGTCAAAGGCTCTCCTCGATGCCAGAATTTATATTGCTAAATATTCTTTGACAAGGGCTGCATTACGAATTCAACGTGCACAGAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATGAATTGGGCATTGAAGCAGGCTGGGAATTTGAGTCTTGAATTCAGTGAAATTGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCTCAAGGGATGGAAAATGGCTTGCTACCTGTTCTCTGACAGGAGCTTCCAAGTTGTGGAGCATGCCCAAAATAAAAAAGCATTCCAGCTTTAAGGGTCACACAGAGCGTGCTACTGATGTTGCTTATTCTCCTGTTCATGATCATTTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATCAAGGATCTCTTTTGAAGACATTTGAGGGTCATCTAGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGAGACGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGCTTTCCACAATGATGGATCATTGGCTGCATCTTGTGGACTAGACTCCCTGGCTCGTGTTTGGGACCTCCGAACTGGAAGAAGTATCCTTGCACTGGAAGGTCATGTCAAACCGGTTCTCGGCATCAGTTTTTCACCCAATGGATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACTCTAATTTAATTTCACAAGTTAAATTTGAGCCACAAGAAGGTTACTTTTTGGTAACTGCCTCGTATGATATGACTGCTAAGGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTGTGGATGTTCTTGGAGATGGCGGGTATATTGTTACCGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAATACGACTGACGAACAAGCTATGGATGTTGACTAA
>Glyma.10g000800.1.p sequence-type=predicted peptide transcript=Glyma.10g000800.1 locus=Glyma.10g000800 ID=Glyma.10g000800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEVEKENTTSAITAEPSVSASDGQDPVSSVNASLPDPIQPVIPQVIAPSVVPPLAPIPALPPPRPLAPLPVRPPVIRPPVPQNGEVGSSDSDSDNDDSNARINQGGGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAAASASIDEAEEELQYPFYTEGSKALLDARIYIAKYSLTRAALRIQRAQRRRDDPDEDMDAEMNWALKQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWSMPKIKKHSSFKGHTERATDVAYSPVHDHLATASADRTAKYWNQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHNDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGYIVTVSHDRTIKLWSSNTTDEQAMDVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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