Glyma.10g000400

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g000400

Feature Type:	gene_model
Chromosome:	Gm10
Start:	62862
stop:	66335
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10g000400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01680.1	AT		JGI	N/A	IEA
GO:0010088	GO-bp	phloem development	EnsemblGenomes	N/A	IEA

Proteins Associated with Glyma.10g000400

Locus	Gene Symbol	Protein Name
	SEO-F3	sieve element occlusion by forisomes 3

Expression Patterns of Glyma.10g000400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.10g000400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma10g00250	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.10g000400

Limit To All Plant Sequences

>Glyma.10g000400.2 sequence-type=transcript locus=Glyma.10g000400 ID=Glyma.10g000400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAATAGGTTGAGCAACTTAATGATATCACAAAACATACATCACTCATTCGCATCCAAACCTAGCTACGAAGCTGATCGATTACCGACATGTCGATCTCCAACACTCAACTAAAGCCTCTGCTTCCCAACCCATTTAATTTGAGTAATACTGAGATCGTTGAAAAAGTTTATGTATCCCACACTTACGACGACGAGATGTTCGATAATGAGCCCCTCTTCAACGTCGTGTCCAACATTATCAAGCTATCAACTCGAATTGTTGGGGCTCTTCTTAAGATAGATGAGCCCAATGGATTTTTAGGAAATCCCATAACCATAAGCAGTTTCAAACCAGAATTCTCCACTCTGAAGCTGATGTCGTGCCAGATGATGACCCTACCTTGGGGGCCAGAAAACGCACACCAAACAACCCTTCGGATTCTTCAACAACTGAGAAAGTACTCTTGGGACGCAAAAGCGCTGATAGCTCTAGCGGCTTTCGCTTTGGAGTATGGAAATTTCTGGAACCTTCAGCAGGCATCAGACCCTCTGGGAAACTCGTTGAGACTGCTGAATCAAATCCAACACAGACAGCTTCCCGTGACTGATATCAACGCAACAGTGAAGTTGGTCATGGAGGCCGTTGAGAAGATCAGACGGTGGGGAACCTTGTCTTCTGATGAAACTTATGAGACTGAGGATGTTCCCGCTCTATCAGATGCATTGCAACTCATCCCCCTCCTTGTTTACTGGGTTGTCGCTTCCCTCGTCGCTTGCAACACCAACATCCAGGGTGTTTCGAACTATGCATTATCGGACTTCCGTGGCAAACTTTCTACCGCTCTGGATGAGTTCAAGCATCACCTGGAGATATGCGAGCAACAAAAAGCTAGTATAGAAGACTACCGGAGACGTAAGAAGGCCTTTAAAAAGCCTAAAGACATCGTCGACTTTTTGAAGCTTCTGATCAATCAAAATGGATACAAGTCTCAAATATATGATGGCAACGCCAACAGAAATAATGTTGAGGTTTTCAAGGAGAAGTATGTGTTGCTGTTCATTTCGGGGCTGGACAGAATTGAAGACGAGATTCGGCTTCTGAATTCAATCTATGAGAGACTTGTGGAAGATCCGAATGACAAGAGCGGTTTCAAGAAAGAGGAATTCAAGATTTTGTGGATCCCGATCGAGAACAAATGGGGGGATGCTAGGAGGGAACTTTTCAACACTTTGAAGAGTGACATAAAGTGGTACGTGGTGGAGTACGCTCAAGTACCCTTACCTGGCATCAGGCTAATTGAAGAGGATCTCAGGTTCCATGGTAAACCTATCCTTCCGGTGGTGAAGCCTCAAGGTGTCCTGTTGAACGATGATGCCTTGGACATCATTTTCGAATGGGGGATCCACGCATTCCCTTTCAGAAAATCCGATGCTTACCTACTTGCTCAGAAATGGAAATGGTTCTGGGATGAGGTCAAGAAAACAAATCTTCATGGTATACAGGTGAAAGGTGATAGGTATATCTTCATATATGGAGGTAGCGACAAGTGGACCCGAGAATTCACTGTGGCAGTGGATAAAATTAAAAGGCACGATACAATAAGGAGGGCAGATGCAATAATAGACTATTACCATTTAGGAAAGGATGACCCCAAGATAGTTCCTCGATTCTGGATTGGCATAGAAGGCAAAAGGCAAAAGAAGCACTCCGAGAATTTGGACTGTGAGATCCAAGAAATTATCAGGTCTCTGCTCTGCCTCAAGCAGGATACACAAGGATGGGCCATTCTGAGCAAAGGGTCCAATGTGAGGATTCTGGGTCACGGCCAACCTATGTATCAAACTGTGGCAGATTTTGAAAAGTGGAAAGAAAGAGTGCTTGTCAAAGAAGGCTTTGACATTGCATTCCAAGAATATTATGACACACAACGTGATCTACCTGCTCCTCAACCATGTGAATTTAACACTTTGGATGTCCTAGCAACCATAACATGCCCAAATGCCTCTTGTGGACGTGTGATGGAGGTCACATCTGTTAATTACAAGTGCTGTCATGGTGGTAATGTTGCTGACCATGCTATTAAATCGAGGTCCACAACCGCAACCTAAAGCTTGAGTCATTCAACCAGGCTTGTTTTGGAGAAACATGAACTTGAATTCAAAGTGTGTTTCTTTTTTACTATATATATGTATGTATGCCTAAACAAGTGCGTTGCCCCTTACGGCCACTTCATTTGTCCTTGAATGGGCAAAAATTAAATAATGGCATCTTTTGTATGTTCTGAATTAGATGATTGAATAAATAAATTCTGTACACACAGAATTTGAA

Coding sequences of Glyma.10g000400

Limit To All Plant Sequences

>Glyma.10g000400.1 sequence-type=CDS polypeptide=Glyma.10g000400.1.p locus=Glyma.10g000400 ID=Glyma.10g000400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGATCTCCAACACTCAACTAAAGCCTCTGCTTCCCAACCCATTTAATTTGAGTAATACTGAGATCGTTGAAAAAGTTTATGTATCCCACACTTACGACGACGAGATGTTCGATAATGAGCCCCTCTTCAACGTCGTGTCCAACATTATCAAGCTATCAACTCGAATTGTTGGGGCTCTTCTTAAGATAGATGAGCCCAATGGATTTTTAGGAAATCCCATAACCATAAGCAGTTTCAAACCAGAATTCTCCACTCTGAAGCTGATGTCGTGCCAGATGATGACCCTACCTTGGGGGCCAGAAAACGCACACCAAACAACCCTTCGGATTCTTCAACAACTGAGAAAGTACTCTTGGGACGCAAAAGCGCTGATAGCTCTAGCGGCTTTCGCTTTGGAGTATGGAAATTTCTGGAACCTTCAGCAGGCATCAGACCCTCTGGGAAACTCGTTGAGACTGCTGAATCAAATCCAACACAGACAGCTTCCCGTGACTGATATCAACGCAACAGTGAAGTTGGTCATGGAGGCCGTTGAGAAGATCAGACGGTGGGGAACCTTGTCTTCTGATGAAACTTATGAGACTGAGGATGTTCCCGCTCTATCAGATGCATTGCAACTCATCCCCCTCCTTGTTTACTGGGTTGTCGCTTCCCTCGTCGCTTGCAACACCAACATCCAGGGTGTTTCGAACTATGCATTATCGGACTTCCGTGGCAAACTTTCTACCGCTCTGGATGAGTTCAAGCATCACCTGGAGATATGCGAGCAACAAAAAGCTAGTATAGAAGACTACCGGAGACGTAAGAAGGCCTTTAAAAAGCCTAAAGACATCGTCGACTTTTTGAAGCTTCTGATCAATCAAAATGGATACAAGTCTCAAATATATGATGGCAACGCCAACAGAAATGTGAATGTTGAGGTTTTCAAGGAGAAGTATGTGTTGCTGTTCATTTCGGGGCTGGACAGAATTGAAGACGAGATTCGGCTTCTGAATTCAATCTATGAGAGACTTGTGGAAGATCCGAATGACAAGAGCGGTTTCAAGAAAGAGGAATTCAAGATTTTGTGGATCCCGATCGAGAACAAATGGGGGGATGCTAGGAGGGAACTTTTCAACACTTTGAAGAGTGACATAAAGTGGTACGTGGTGGAGTACGCTCAAGTACCCTTACCTGGCATCAGGCTAATTGAAGAGGATCTCAGGTTCCATGGTAAACCTATCCTTCCGGTGGTGAAGCCTCAAGGTGTCCTGTTGAACGATGATGCCTTGGACATCATTTTCGAATGGGGGATCCACGCATTCCCTTTCAGAAAATCCGATGCTTACCTACTTGCTCAGAAATGGAAATGGTTCTGGGATGAGGTCAAGAAAACAAATCTTCATGGTATACAGGTGAAAGGTGATAGGTATATCTTCATATATGGAGGTAGCGACAAGTGGACCCGAGAATTCACTGTGGCAGTGGATAAAATTAAAAGGCACGATACAATAAGGAGGGCAGATGCAATAATAGACTATTACCATTTAGGAAAGGATGACCCCAAGATAGTTCCTCGATTCTGGATTGGCATAGAAGGCAAAAGGCAAAAGAAGCACTCCGAGAATTTGGACTGTGAGATCCAAGAAATTATCAGGTCTCTGCTCTGCCTCAAGCAGGATACACAAGGATGGGCCATTCTGAGCAAAGGGTCCAATGTGAGGATTCTGGGTCACGGCCAACCTATGTATCAAACTGTGGCAGATTTTGAAAAGTGGAAAGAAAGAGTGCTTGTCAAAGAAGGCTTTGACATTGCATTCCAAGAATATTATGACACACAACGTGATCTACCTGCTCCTCAACCATGTGAATTTAACACTTTGGATGTCCTAGCAACCATAACATGCCCAAATGCCTCTTGTGGACGTGTGATGGAGGTCACATCTGTTAATTACAAGTGCTGTCATGGTGGTAATGTTGCTGACCATGCTATTAAATCGAGGTCCACAACCGCAACCTAA

>Glyma.10g000400.2 sequence-type=CDS polypeptide=Glyma.10g000400.2.p locus=Glyma.10g000400 ID=Glyma.10g000400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGATCTCCAACACTCAACTAAAGCCTCTGCTTCCCAACCCATTTAATTTGAGTAATACTGAGATCGTTGAAAAAGTTTATGTATCCCACACTTACGACGACGAGATGTTCGATAATGAGCCCCTCTTCAACGTCGTGTCCAACATTATCAAGCTATCAACTCGAATTGTTGGGGCTCTTCTTAAGATAGATGAGCCCAATGGATTTTTAGGAAATCCCATAACCATAAGCAGTTTCAAACCAGAATTCTCCACTCTGAAGCTGATGTCGTGCCAGATGATGACCCTACCTTGGGGGCCAGAAAACGCACACCAAACAACCCTTCGGATTCTTCAACAACTGAGAAAGTACTCTTGGGACGCAAAAGCGCTGATAGCTCTAGCGGCTTTCGCTTTGGAGTATGGAAATTTCTGGAACCTTCAGCAGGCATCAGACCCTCTGGGAAACTCGTTGAGACTGCTGAATCAAATCCAACACAGACAGCTTCCCGTGACTGATATCAACGCAACAGTGAAGTTGGTCATGGAGGCCGTTGAGAAGATCAGACGGTGGGGAACCTTGTCTTCTGATGAAACTTATGAGACTGAGGATGTTCCCGCTCTATCAGATGCATTGCAACTCATCCCCCTCCTTGTTTACTGGGTTGTCGCTTCCCTCGTCGCTTGCAACACCAACATCCAGGGTGTTTCGAACTATGCATTATCGGACTTCCGTGGCAAACTTTCTACCGCTCTGGATGAGTTCAAGCATCACCTGGAGATATGCGAGCAACAAAAAGCTAGTATAGAAGACTACCGGAGACGTAAGAAGGCCTTTAAAAAGCCTAAAGACATCGTCGACTTTTTGAAGCTTCTGATCAATCAAAATGGATACAAGTCTCAAATATATGATGGCAACGCCAACAGAAATAATGTTGAGGTTTTCAAGGAGAAGTATGTGTTGCTGTTCATTTCGGGGCTGGACAGAATTGAAGACGAGATTCGGCTTCTGAATTCAATCTATGAGAGACTTGTGGAAGATCCGAATGACAAGAGCGGTTTCAAGAAAGAGGAATTCAAGATTTTGTGGATCCCGATCGAGAACAAATGGGGGGATGCTAGGAGGGAACTTTTCAACACTTTGAAGAGTGACATAAAGTGGTACGTGGTGGAGTACGCTCAAGTACCCTTACCTGGCATCAGGCTAATTGAAGAGGATCTCAGGTTCCATGGTAAACCTATCCTTCCGGTGGTGAAGCCTCAAGGTGTCCTGTTGAACGATGATGCCTTGGACATCATTTTCGAATGGGGGATCCACGCATTCCCTTTCAGAAAATCCGATGCTTACCTACTTGCTCAGAAATGGAAATGGTTCTGGGATGAGGTCAAGAAAACAAATCTTCATGGTATACAGGTGAAAGGTGATAGGTATATCTTCATATATGGAGGTAGCGACAAGTGGACCCGAGAATTCACTGTGGCAGTGGATAAAATTAAAAGGCACGATACAATAAGGAGGGCAGATGCAATAATAGACTATTACCATTTAGGAAAGGATGACCCCAAGATAGTTCCTCGATTCTGGATTGGCATAGAAGGCAAAAGGCAAAAGAAGCACTCCGAGAATTTGGACTGTGAGATCCAAGAAATTATCAGGTCTCTGCTCTGCCTCAAGCAGGATACACAAGGATGGGCCATTCTGAGCAAAGGGTCCAATGTGAGGATTCTGGGTCACGGCCAACCTATGTATCAAACTGTGGCAGATTTTGAAAAGTGGAAAGAAAGAGTGCTTGTCAAAGAAGGCTTTGACATTGCATTCCAAGAATATTATGACACACAACGTGATCTACCTGCTCCTCAACCATGTGAATTTAACACTTTGGATGTCCTAGCAACCATAACATGCCCAAATGCCTCTTGTGGACGTGTGATGGAGGTCACATCTGTTAATTACAAGTGCTGTCATGGTGGTAATGTTGCTGACCATGCTATTAAATCGAGGTCCACAACCGCAACCTAA

Predicted protein sequences of Glyma.10g000400

Limit To All Plant Sequences

>Glyma.10g000400.1.p sequence-type=predicted peptide transcript=Glyma.10g000400.1 locus=Glyma.10g000400 ID=Glyma.10g000400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSISNTQLKPLLPNPFNLSNTEIVEKVYVSHTYDDEMFDNEPLFNVVSNIIKLSTRIVGALLKIDEPNGFLGNPITISSFKPEFSTLKLMSCQMMTLPWGPENAHQTTLRILQQLRKYSWDAKALIALAAFALEYGNFWNLQQASDPLGNSLRLLNQIQHRQLPVTDINATVKLVMEAVEKIRRWGTLSSDETYETEDVPALSDALQLIPLLVYWVVASLVACNTNIQGVSNYALSDFRGKLSTALDEFKHHLEICEQQKASIEDYRRRKKAFKKPKDIVDFLKLLINQNGYKSQIYDGNANRNVNVEVFKEKYVLLFISGLDRIEDEIRLLNSIYERLVEDPNDKSGFKKEEFKILWIPIENKWGDARRELFNTLKSDIKWYVVEYAQVPLPGIRLIEEDLRFHGKPILPVVKPQGVLLNDDALDIIFEWGIHAFPFRKSDAYLLAQKWKWFWDEVKKTNLHGIQVKGDRYIFIYGGSDKWTREFTVAVDKIKRHDTIRRADAIIDYYHLGKDDPKIVPRFWIGIEGKRQKKHSENLDCEIQEIIRSLLCLKQDTQGWAILSKGSNVRILGHGQPMYQTVADFEKWKERVLVKEGFDIAFQEYYDTQRDLPAPQPCEFNTLDVLATITCPNASCGRVMEVTSVNYKCCHGGNVADHAIKSRSTTAT*

>Glyma.10g000400.2.p sequence-type=predicted peptide transcript=Glyma.10g000400.2 locus=Glyma.10g000400 ID=Glyma.10g000400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSISNTQLKPLLPNPFNLSNTEIVEKVYVSHTYDDEMFDNEPLFNVVSNIIKLSTRIVGALLKIDEPNGFLGNPITISSFKPEFSTLKLMSCQMMTLPWGPENAHQTTLRILQQLRKYSWDAKALIALAAFALEYGNFWNLQQASDPLGNSLRLLNQIQHRQLPVTDINATVKLVMEAVEKIRRWGTLSSDETYETEDVPALSDALQLIPLLVYWVVASLVACNTNIQGVSNYALSDFRGKLSTALDEFKHHLEICEQQKASIEDYRRRKKAFKKPKDIVDFLKLLINQNGYKSQIYDGNANRNNVEVFKEKYVLLFISGLDRIEDEIRLLNSIYERLVEDPNDKSGFKKEEFKILWIPIENKWGDARRELFNTLKSDIKWYVVEYAQVPLPGIRLIEEDLRFHGKPILPVVKPQGVLLNDDALDIIFEWGIHAFPFRKSDAYLLAQKWKWFWDEVKKTNLHGIQVKGDRYIFIYGGSDKWTREFTVAVDKIKRHDTIRRADAIIDYYHLGKDDPKIVPRFWIGIEGKRQKKHSENLDCEIQEIIRSLLCLKQDTQGWAILSKGSNVRILGHGQPMYQTVADFEKWKERVLVKEGFDIAFQEYYDTQRDLPAPQPCEFNTLDVLATITCPNASCGRVMEVTSVNYKCCHGGNVADHAIKSRSTTAT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain