SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.10G296200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.10G296200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.10G296200

Feature Type:gene_model
Chromosome:Gm10
Start:51306677
stop:51314923
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10G296200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12250.1AT TGACG motif-binding factor 6 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI N/AIEA
PTHR22952:SF53Panther JGI N/AIEA
PF00170PFAM bZIP transcription factor JGI N/AIEA

Proteins Associated with Glyma.10G296200
LocusGene SymbolProtein Name
bZIP80 Basic leucine zipper transcription factor-like protein gene 80

Expression Patterns of Glyma.10G296200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10G296200 not represented in the dataset
Glyma.10G296200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10G296200
ParalogEvidenceComments
Glyma.20g246400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10G296200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g296200 Wm82.a4.v1ISS As supplied by JGI
Glyma10g44270 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.10G296200
>Glyma.10g296200.2 sequence-type=transcript locus=Glyma.10g296200 ID=Glyma.10g296200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACTGGAACATTAAAAAATAAAAATGAAAAAAAATGAAAAGCCATTAGCTCTCTCTCGGAAGCAGAACAAAACAAGACGTCTAGAAATTGGATTGATCCTTTCTCTCTCTCTTTCTTCCCAACTCAACTCAAGTCCTCTTCCTTTCACTTTAATCCAACAATAATAATTATTCGCAAAAAAAAAAAAAACACGTTGAACAGATACcatcatcattcatcttcatccccacatcatcaGAATTTCAAGACTCAGTTTTTGACTCACTAAGTAAGTAGCCAAACAATTTCTCGGGTTCCTGTTCAAGTTGATTCCTTTGATAAGGTTCAATTATCAAATCTGGTCAGTGGTGATACGGAACACCAGGAAGAGTCTGCCATGGCTGACGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACGGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAGTCTCCGGAGGCTTGCTCAGAATCGCGAGGCTGCAAGAAAAAGTCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTCGAAAGTAGTCGCTTAAAGTTGACCCAACTGGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGGTGTAAATTCTCATGCAGGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAGGCTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGCTGTCTGGAATGTGGAAGACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACGGAGCAACAGTTAGTGGGTATCACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCTTTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTAGGTTGCGTGCCCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGATGGGGGTAAATAGTGTGTCATTAATTTTCATGGATCTGGCACCAGAATCCTTTGGCATAGGTTTTTTACTCTTGCAATTTTACTGTGTTGTAGTTTTCACATTACTGATATTAGTTTCAGTAAGTTATTATCTAGAAACTGAATTGGTGACATGACAAGGGTATGTATTTTGTTTATTACTACTAACGTAATAATATTGTCTATTGTAACACAGTTGAAGGAATTTAGATGATTTTATACAAAAAATGGTTGGGA
Coding sequences of Glyma.10G296200
>Glyma.10g296200.1 sequence-type=CDS polypeptide=Glyma.10g296200.1.p locus=Glyma.10g296200 ID=Glyma.10g296200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGACGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACGGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAGTCTCCGGAGGCTTGCTCAGAATCGCGAGGCTGCAAGAAAAAGTCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTCGAAAGTAGTCGCTTAAAGTTGACCCAACTGGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGGTGTAAATTCTCATGCAGGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAGGCTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGCTGTCTGGAATGTGGAAGACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACGGAGCAACAGTTAGTGGGTATCACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCTTTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTAGGTTGCGTGCCCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGA

>Glyma.10g296200.2 sequence-type=CDS polypeptide=Glyma.10g296200.2.p locus=Glyma.10g296200 ID=Glyma.10g296200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGACGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACGGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTGGCTTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAGTCTCCGGAGGCTTGCTCAGAATCGCGAGGCTGCAAGAAAAAGTCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTCGAAAGTAGTCGCTTAAAGTTGACCCAACTGGAGCAAGAGCTTCAGAGAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCATTTGATGTAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGGTGTAAATTCTCATGCAGGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAGGCTGAAGGCCAATGCAGCTAAGGCTGATGTCTTCCATTTGCTGTCTGGAATGTGGAAGACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACGGAGCAACAGTTAGTGGGTATCACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCTTTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCACTGGATCACTTGGCTCCTCTGGTTCATCAGGCAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTAGGTTGCGTGCCCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGA
Predicted protein sequences of Glyma.10G296200
>Glyma.10g296200.1.p sequence-type=predicted peptide transcript=Glyma.10g296200.1 locus=Glyma.10g296200 ID=Glyma.10g296200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADASPRTDISTDVDTDDKNPRFDRSQSLVAVASDSSDRSKDKSDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRAGVNSHAGDTELRMIIDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLHQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD*

>Glyma.10g296200.2.p sequence-type=predicted peptide transcript=Glyma.10g296200.2 locus=Glyma.10g296200 ID=Glyma.10g296200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADASPRTDISTDVDTDDKNPRFDRSQSLVAVASDSSDRSKDKSDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRAGVNSHAGDTELRMIIDGIMAHYDEIFRLKANAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSTGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLHQIHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo