Glyma.10G285900

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Report for Sequence Feature Glyma.10G285900

Feature Type:	gene_model
Chromosome:	Gm10
Start:	50569503
stop:	50574849
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.10G285900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23280.1	AT	TCP family transcription factor	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
PTHR11584	Panther	SERINE/THREONINE PROTEIN KINASE	JGI	N/A	IEA
PTHR11584:SF275	Panther		JGI	N/A	IEA
PF03634	PFAM	TCP family transcription factor	JGI	N/A	IEA

Proteins Associated with Glyma.10G285900

Locus	Gene Symbol	Protein Name
	TCP15	Teosinte branched1 and cycloidea and proliferating cell factor family protein gene 15

Expression Patterns of Glyma.10G285900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.10G285900

Paralog	Evidence	Comments
Glyma.20g103400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10G285900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g285900	Wm82.a4.v1	ISS	As supplied by JGI
Glyma10g43190	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.10G285900

Limit To All Plant Sequences

>Glyma.10g285900.1 sequence-type=CDS polypeptide=Glyma.10g285900.1.p locus=Glyma.10g285900 ID=Glyma.10g285900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGAACTCCGACGCCACCACTAACGGCGTCAGTAACGGCGCCATCATTGATGCGCAGAGACAGCAGGCCTTAGCCGTTAAGAAGCCGCCGTCTAAGGACCGTCACAGCAAGGTGGACGGCCGAGGGCGCCGCATAAGGATGCCAATCATATGCGCCGCACGTGTGTTCCAGCTCACGCGCGAGCTTGGCCACAAGTCCGACGGTCAAACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCTCCGGAACCACCCCCGCCAGCTTCTCCTCCGTCTCCCTCTCCGTCCGCGCCGCCGCCAACTCCCTCTCCTCCCCTTCCTCCACCTCCGACCACAAGCCCCAGTTACTCTCTCCCACTCCCTTCATCCTCGGCAAGCGCATACGCACCGACGAAGACTCTTCCAAAGACGAAGCTGTCTCCGTGGGGCCCTCTCTTGTGGGCCCTTCTACTCCTCCCGGACTGTGGGCCCTCCCGGCCCGGCCCGATTTCGGACAAATTTGGAGCTTCGCCGCCGCCGCTGCTCCCGAAATGGTGTCGGTGTCGCAGCAGCAGCAGGCTTCATTGTTCGCTCATCACCACCGTCAGCAGCAGCAGCAAGCCATCGGAGAAGCTTCGGCGGCGAGGGTGGGAAATTACCTTCCTGGACATCTGAATTTGCTCGCCTCATTGTCTGGTGGACCTGGGAATTCTGGTCGGAGAGACGATGAGCCTCGTTGA

Predicted protein sequences of Glyma.10G285900

Limit To All Plant Sequences

>Glyma.10g285900.1.p sequence-type=predicted peptide transcript=Glyma.10g285900.1 locus=Glyma.10g285900 ID=Glyma.10g285900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNSDATTNGVSNGAIIDAQRQQALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSSVSLSVRAAANSLSSPSSTSDHKPQLLSPTPFILGKRIRTDEDSSKDEAVSVGPSLVGPSTPPGLWALPARPDFGQIWSFAAAAAPEMVSVSQQQQASLFAHHHRQQQQQAIGEASAARVGNYLPGHLNLLASLSGGPGNSGRRDDEPR*

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