SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25540.1 | AT | homolog of DNA mismatch repair protein MSH3 | JGI | N/A | IEA |
| GO:0006298 | GO-bp | mismatch repair | EnsemblGenomes | N/A | IEA |
| GO:0006298 | GO-bp | mismatch repair | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0030983 | GO-mf | mismatched DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0030983 | GO-mf | mismatched DNA binding | JGI | N/A | IEA |
| PTHR11361 | Panther | DNA MISMATCH REPAIR MUTS RELATED PROTEINS | JGI | N/A | IEA |
| PTHR11361:SF24 | Panther | JGI | N/A | IEA | |
| PF00488 | PFAM | MutS domain V | JGI | N/A | IEA |
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Glyma.10G236800 not represented in the dataset |
Glyma.10G236800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.20g157600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.10g236800.1 sequence-type=CDS polypeptide=Glyma.10g236800.1.p locus=Glyma.10g236800 ID=Glyma.10g236800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGAAAGTGTGTCTAGGGTTTGTAAAGAAAGAGGAGAAAGGATACGAACTTGACTTTCATGCGAGCGAGACGATCCGCGACGGAGGTATCCTTCTCCATCTTGGGCTCCTTCGTGCCGAACGTGTAGCTGGACAACGGTTATCAACTGATGTAAAGGTTCCTTCAAACTGGATCAAGGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTAAAGTAGTGACAGCATTAGACAAGTTATCATTAGCAGAAGAGGAGCTCACTGTTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCCTTAGATTGTCTGCATTCATTTGCCATTCTTTCAAGAAATAAGGGTTATGTTCGCCCAGTGTTTGTAGATGATCATGAGCCTGTTCAAATACAAATTTGTTCTGGTAGACATCTGGTTTTAAAGACTACCTTACAAGACAATTTTGTCCCAAATGATACAAACATGCATGCAGATGGAGAGAACTGTCAGATTGTTACTGGACCCAATATGGGGGGAAAAAGTTGCTACATTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTTCATGTCCTGGATAGAATCTACACCCGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAATTAAGTGAGACTTCACATATACTCCATAGCTGCACAGAACATTCACTGGTTGTCATAGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCATGCGACGTTGTATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTCACACACTATCCCAAGATTGCCACGTATCACGTGTCACATCTGACCTCACACGATGCAAGTAAAAATTCCAACTTGGATCATGATATCACTTATCTATACAAGCTAGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTACCATCACATTGCATAAGTCGAGCTATTGTCATGGCTTCTAAATTAGAAGCACTAGTAAACAGTAGAATACATGGTAGATCAAGAAAGGAGCTAGAAAGTATAGCTTACAAAGATTTCTATTTAAACTTAAAAGCTGCAACACAAGATGACGATGGTGCTAAATGCTTTCACCTATTGGAACATGCTAGAAGCATTGCAAAGAAATTAATTGGCAGGTGA
>Glyma.10g236800.1.p sequence-type=predicted peptide transcript=Glyma.10g236800.1 locus=Glyma.10g236800 ID=Glyma.10g236800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKKVCLGFVKKEEKGYELDFHASETIRDGGILLHLGLLRAERVAGQRLSTDVKVPSNWIKVNSTKKTIRYHPPKVVTALDKLSLAEEELTVACRAAWNSFLRDFSKHYAEFQAAVQALAALDCLHSFAILSRNKGYVRPVFVDDHEPVQIQICSGRHLVLKTTLQDNFVPNDTNMHADGENCQIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSHILHSCTEHSLVVIDELGRGTSTHDGMAIAHATLYYLLKQKRSMVLFVTHYPKIATYHVSHLTSHDASKNSNLDHDITYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSRKELESIAYKDFYLNLKAATQDDDGAKCFHLLEHARSIAKKLIGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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