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Report for Sequence Feature Glyma.10G080600

Feature Type:gene_model
Chromosome:Gm10
Start:9501678
stop:9504456
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10G080600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65540.1AT LETM1-like protein JGI N/AIEA
GO:0006875GO-bp cellular metal ion homeostasis EnsemblGenomesN/AIEA
GO:0005623GO-cc cell EnsemblGenomesN/AIEA
PTHR14009Panther LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN JGI N/AIEA
PTHR14009:SF1Panther LETM1 AND EF-HAND DOMAIN-CONTAINING PROTEIN ANON-60DA, MITOCHONDRIAL JGI N/AIEA
PF07766PFAM LETM1-like protein JGI N/AIEA

Expression Patterns of Glyma.10G080600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.10G080600 not represented in the dataset
Glyma.10G080600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.10G080600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g09941 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10G080600
>Glyma.10g080600.1 sequence-type=CDS polypeptide=Glyma.10g080600.1.p locus=Glyma.10g080600 ID=Glyma.10g080600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTTATTGTTGCCAGTATTCCTTAAATTATTTCCCAACATGCTGCCTTCCACTTTCCAGGACAAGATGAAAGAACAGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTATAAAAGAAATGGCAAAGGAGATTCATAACTCACAAAGTGGAGAAATGAAGAAGACAGCAAAAGATCTTGATGAATTTATGAACAAGGTCAGAACAGGTGCTCGAGTTTCTAACGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAAGTTGGATTATGATGGGAAAGTGACACCTGAGGAGGTAGTATCTGTTGCTATGTATCTGAAGGACACTCTGGGCAAAGAAGGAATTCATGAGCTTATCAGCAACCTTTCCAAGGATAGCGTTCAACTCATTGTCAAAGACAGTTTCCCAAGCCATCTTGGGACTTCAATGATAAATTTCTTCACAACTGAAAATGAATCATTCTCTAAACCAAATGAAAGTCAGTCACCTCCGTGA
Predicted protein sequences of Glyma.10G080600
>Glyma.10g080600.1.p sequence-type=predicted peptide transcript=Glyma.10g080600.1 locus=Glyma.10g080600 ID=Glyma.10g080600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MELLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTIKEMAKEIHNSQSGEMKKTAKDLDEFMNKVRTGARVSNDEILGFAKLFNDELTLDNISKLDYDGKVTPEEVVSVAMYLKDTLGKEGIHELISNLSKDSVQLIVKDSFPSHLGTSMINFFTTENESFSKPNESQSPP*






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