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Report for Sequence Feature Glyma.09g283300

Feature Type:gene_model
Chromosome:Gm09
Start:49890371
stop:49892024
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g283300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08290.1AT mRNA splicing factor, thioredoxin-like U5 snRNP JGI N/AIEA
GO:0000245GO-bp spliceosomal complex assembly EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis JGI N/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex JGI N/AIEA
GO:0005682GO-cc U5 snRNP EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
KOG3414 KOG Component of the U4/U6.U5 snRNP/mitosis protein DIM1 JGI N/AIEA
PTHR12052Panther THIOREDOXIN-LIKE PROTEN 4A, 4B JGI N/AIEA
PF02966PFAM Mitosis protein DIM1 JGI N/AIEA

Proteins Associated with Glyma.09g283300
LocusGene SymbolProtein Name
DIM1 DIM 1-like protein

Expression Patterns of Glyma.09g283300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.09g283300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g42010 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g283300
>Glyma.09g283300.1 sequence-type=CDS polypeptide=Glyma.09g283300.1.p locus=Glyma.09g283300 ID=Glyma.09g283300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTACCTGTTGCCTCACTTGCACTCTGGATGGGCCGTCGATCAAGCAATCCTCGCCGAAGAGGAGCGTCTCGTCGTCATCCGTTTCGGCCACGACTGGGACGAAACCTGCATGCAGATGGACGAGGTGTTGGCGTCAGTGGCGGAGACGATAAAGAACTTTGCGGTGATATACCTGGTGGACATAACGGAGGTGCCGGATTTCAACACCATGTACGAGCTCTACGACCCTTCCACGGTGATGTTCTTCTTCAGGAACAAGCACATCATGATTGATCTCGGAACCGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCATCGACATTGTTGAGACCGTCTATCGTGGAGCCAGGAAGGGACGGGGTCTCGTCATCGCTCCCAAAGATTACTCCACCAAGTACCGTTACTAG
Predicted protein sequences of Glyma.09g283300
>Glyma.09g283300.1.p sequence-type=predicted peptide transcript=Glyma.09g283300.1 locus=Glyma.09g283300 ID=Glyma.09g283300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY*






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