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Report for Sequence Feature Glyma.09g281400

Feature Type:gene_model
Chromosome:Gm09
Start:49668985
stop:49676216
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g281400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18620.1AT DHHC-type zinc finger family protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
GO:0019706GO-mf protein-cysteine S-palmitoyltransferase activity EnsemblGenomesN/AIEA
KOG1313 KOG DHHC-type Zn-finger proteins JGI N/AIEA
PTHR22883Panther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN JGI N/AIEA
PF01529PFAM DHHC palmitoyltransferase JGI N/AIEA

Expression Patterns of Glyma.09g281400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g281400
ParalogEvidenceComments
Glyma.20g004400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g281400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g41790 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g281400
>Glyma.09g281400.2 sequence-type=transcript locus=Glyma.09g281400 ID=Glyma.09g281400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGGACCCGCTTGAGCCGTGCCTAGTGTCGTTAGTGTGAGAACGGTTTTGAACCGAACCGCATTGGTTTGAAATGCATCATCATCACGTGCGTGCGATTAATCGAAACGAAAGTACAAAATTGCAAACTCCCTGTTCAAGTTTGAGGTCTTACTCAGCTTCCAATTCTTACACTGTTATGGATTCTTCTTCTTCTTCTACCCAGTTTGAAAATTTTGTAGCTTCCTTGGTTGCTCATGTAAGTCACATATAGGAGCAATTTGTAACTGAGGTTACCGAGAATTATGAGACAACATGCTGGGGTTGTGGACTGCGTGTTTTGCTTCCATCATGTGCATCTGCTTTCAAATGTGGCTGGTGTGGGGCCATTACAGATCAGAACAAAATGAAACGGGACCAGAAGTGCATCAGGTGGAGAGTAGTCCGTGATCGATGCTTTGTTTCTGTTGTCCTCGTATTTATGTTTTTTGTAATATTTGGTGGGGTGTGGACAGTTTATCCTGTTGTCTTTTCTATCAGTATTCTTTGTGGAGTTTTTCACTCAATCGTTACAGCAATCTTGTCCATAGCCACCATTTCCTTTTTCAGCTTTGCAGCATTTAGATGTGCTGGCACTCCACCAAATATATTATGGGGAAGCTACCCTGCTGTAGGGAAAGATGACCTTGAAAATTATACATACTGTCACTACTGCTCAAAGCCAAAGTCACCTAGAGCTCATCATTGTCGTTCTTGTAGAAAATGTGTTCTGGACATGGATCATCATTGCCCATTTATTGGGAACTGTGTTGGTTCAGCTAATCACCGAAGCTTCATTGCCTTCCTCATTTCTGCAGTGTTGAGTACAATCTATGTCTCTATCATGTCAGCATATGCAGGCTTGCGTACATGGCCACCGTTGAAATACTCCCTTGGGCACATAAACGGGGTTAGTAGCAGCGAACTGGCATGGAGAATCATAAATGAAATCGTTGTTGCATTCCTGAGATCTGCCCTGCTTCTTTCCTCCAGGGGACTCATTCTTGCTTATCTTTTCATTGCAAGTGTGTCGTTGCAGATAGGTTTGAGCATTCTTTTATGGCAGCAGCTCTCCTATATATACCAGGGGAAAACTTATTTGAGTCACTTGAGTTCACAAACAGATAATGAAGAAGAAAAGAAAGATTGCCAAAATCTTGTTACATTTTTTGGTCTTCAATATTCTGTAACGAGATTTTTGCCAACCTTCCGTGTTACTCGAAAGAGACACATCAAATGAAACAGTCGTGTTTTGTAGTCAATTACTTTGGCACGTTTTGACAATTTGTATCAAAGTACGATTGGAATTTTTTCAGAAAAAGATCACTTCAACGTGTATATACTTGTGGACTAGCATAAATTGTTGACAAGAGGTGTCAGGAGTGCCAGTCTCTTTTGTGTTGGCTGATGGATTAGTTTCCAATTGTGTTTAGGATTGCCCTGAATATGGTATGGGAAATTTTAGGGGCACGTTCAACTTTGTGTTTCTGACCAAAATCAATTAGGTTGTGTTCTATAATTTTTGGGGGTGACTTCGGTCCTCTAGCTTTAGAGGTGTTTCTGTGAATAGAGAAGGATTTATCACTGTGTTAGTACTTCCAAATTTTAATAAACTTCAGGCTTCTGAGCTTTATACGTCTGAAGGTCTCACTTTATTATAGAAATGCATTGTGCAGGCAATTTAAAACCTAGGAGCATAGCTAATGTATTAAAAACAATATTTGTATTTTTTGTGCAGTGCTGGTAATAGTGTGCTTGTGTATAAACCTATTAAGAATAT
Coding sequences of Glyma.09g281400
>Glyma.09g281400.1 sequence-type=CDS polypeptide=Glyma.09g281400.1.p locus=Glyma.09g281400 ID=Glyma.09g281400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATCATCATCACGTGCGTGCGATTAATCGAAACGAAAGTACAAAATTGCAAACTCCCTGTTCAAGTTTGAGGTCTTACTCAGCTTCCAATTCTTACACTGTTATGGATTCTTCTTCTTCTTCTACCCAGGAGCAATTTGTAACTGAGGTTACCGAGAATTATGAGACAACATGCTGGGGTTGTGGACTGCGTGTTTTGCTTCCATCATGTGCATCTGCTTTCAAATGTGGCTGGTGTGGGGCCATTACAGATCAGAACAAAATGAAACGGGACCAGAAGTGCATCAGGTGGAGAGTAGTCCGTGATCGATGCTTTGTTTCTGTTGTCCTCGTATTTATGTTTTTTGTAATATTTGGTGGGGTGTGGACAGTTTATCCTGTTGTCTTTTCTATCAGTATTCTTTGTGGAGTTTTTCACTCAATCGTTACAGCAATCTTGTCCATAGCCACCATTTCCTTTTTCAGCTTTGCAGCATTTAGATGTGCTGGCACTCCACCAAATATATTATGGGGAAGCTACCCTGCTGTAGGGAAAGATGACCTTGAAAATTATACATACTGTCACTACTGCTCAAAGCCAAAGTCACCTAGAGCTCATCATTGTCGTTCTTGTAGAAAATGTGTTCTGGACATGGATCATCATTGCCCATTTATTGGGAACTGTGTTGGTTCAGCTAATCACCGAAGCTTCATTGCCTTCCTCATTTCTGCAGTGTTGAGTACAATCTATGTCTCTATCATGTCAGCATATGCAGGCTTGCGTACATGGCCACCGTTGAAATACTCCCTTGGGCACATAAACGGGGTTAGTAGCAGCGAACTGGCATGGAGAATCATAAATGAAATCGTTGTTGCATTCCTGAGATCTGCCCTGCTTCTTTCCTCCAGGGGACTCATTCTTGCTTATCTTTTCATTGCAAGTGTGTCGTTGCAGATAGGTTTGAGCATTCTTTTATGGCAGCAGCTCTCCTATATATACCAGGGGAAAACTTATTTGAGTCACTTGAGTTCACAAACAGATAATGAAGAAGAAAAGAAAGATTGCCAAAATCTTGTTACATTTTTTGGTCTTCAATATTCTGTAACGAGATTTTTGCCAACCTTCCGTGTTACTCGAAAGAGACACATCAAATGA

>Glyma.09g281400.2 sequence-type=CDS polypeptide=Glyma.09g281400.2.p locus=Glyma.09g281400 ID=Glyma.09g281400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAACGGGACCAGAAGTGCATCAGGTGGAGAGTAGTCCGTGATCGATGCTTTGTTTCTGTTGTCCTCGTATTTATGTTTTTTGTAATATTTGGTGGGGTGTGGACAGTTTATCCTGTTGTCTTTTCTATCAGTATTCTTTGTGGAGTTTTTCACTCAATCGTTACAGCAATCTTGTCCATAGCCACCATTTCCTTTTTCAGCTTTGCAGCATTTAGATGTGCTGGCACTCCACCAAATATATTATGGGGAAGCTACCCTGCTGTAGGGAAAGATGACCTTGAAAATTATACATACTGTCACTACTGCTCAAAGCCAAAGTCACCTAGAGCTCATCATTGTCGTTCTTGTAGAAAATGTGTTCTGGACATGGATCATCATTGCCCATTTATTGGGAACTGTGTTGGTTCAGCTAATCACCGAAGCTTCATTGCCTTCCTCATTTCTGCAGTGTTGAGTACAATCTATGTCTCTATCATGTCAGCATATGCAGGCTTGCGTACATGGCCACCGTTGAAATACTCCCTTGGGCACATAAACGGGGTTAGTAGCAGCGAACTGGCATGGAGAATCATAAATGAAATCGTTGTTGCATTCCTGAGATCTGCCCTGCTTCTTTCCTCCAGGGGACTCATTCTTGCTTATCTTTTCATTGCAAGTGTGTCGTTGCAGATAGGTTTGAGCATTCTTTTATGGCAGCAGCTCTCCTATATATACCAGGGGAAAACTTATTTGAGTCACTTGAGTTCACAAACAGATAATGAAGAAGAAAAGAAAGATTGCCAAAATCTTGTTACATTTTTTGGTCTTCAATATTCTGTAACGAGATTTTTGCCAACCTTCCGTGTTACTCGAAAGAGACACATCAAATGA
Predicted protein sequences of Glyma.09g281400
>Glyma.09g281400.1.p sequence-type=predicted peptide transcript=Glyma.09g281400.1 locus=Glyma.09g281400 ID=Glyma.09g281400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHHHHVRAINRNESTKLQTPCSSLRSYSASNSYTVMDSSSSSTQEQFVTEVTENYETTCWGCGLRVLLPSCASAFKCGWCGAITDQNKMKRDQKCIRWRVVRDRCFVSVVLVFMFFVIFGGVWTVYPVVFSISILCGVFHSIVTAILSIATISFFSFAAFRCAGTPPNILWGSYPAVGKDDLENYTYCHYCSKPKSPRAHHCRSCRKCVLDMDHHCPFIGNCVGSANHRSFIAFLISAVLSTIYVSIMSAYAGLRTWPPLKYSLGHINGVSSSELAWRIINEIVVAFLRSALLLSSRGLILAYLFIASVSLQIGLSILLWQQLSYIYQGKTYLSHLSSQTDNEEEKKDCQNLVTFFGLQYSVTRFLPTFRVTRKRHIK*

>Glyma.09g281400.2.p sequence-type=predicted peptide transcript=Glyma.09g281400.2 locus=Glyma.09g281400 ID=Glyma.09g281400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRDQKCIRWRVVRDRCFVSVVLVFMFFVIFGGVWTVYPVVFSISILCGVFHSIVTAILSIATISFFSFAAFRCAGTPPNILWGSYPAVGKDDLENYTYCHYCSKPKSPRAHHCRSCRKCVLDMDHHCPFIGNCVGSANHRSFIAFLISAVLSTIYVSIMSAYAGLRTWPPLKYSLGHINGVSSSELAWRIINEIVVAFLRSALLLSSRGLILAYLFIASVSLQIGLSILLWQQLSYIYQGKTYLSHLSSQTDNEEEKKDCQNLVTFFGLQYSVTRFLPTFRVTRKRHIK*






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