SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.09g280100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.09g280100): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.09g280100

Feature Type:gene_model
Chromosome:Gm09
Start:49535303
stop:49537659
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g280100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17890.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0009226GO-bp nucleotide-sugar biosynthetic process EnsemblGenomesN/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0045226GO-bp extracellular polysaccharide biosynthetic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0008831GO-mf dTDP-4-dehydrorhamnose reductase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
KOG1431 KOG GDP-L-fucose synthetase JGI N/AIEA
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI N/AIEA
PTHR10366:SF106Panther JGI N/AIEA
PF01370PFAM NAD dependent epimerase/dehydratase family JGI N/AIEA
PWY-66SoyCyc9 GDP-L-fucose biosynthesis I (from GDP-D-mannose) Plant Metabolic Network ISS
GN7V-59843SoyCyc9-rxn GDP-L-fucose synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.09g280100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g280100 not represented in the dataset
Glyma.09g280100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g280100
ParalogEvidenceComments
Glyma.18g208900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g280100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g41650 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g280100
>Glyma.09g280100.1 sequence-type=CDS polypeptide=Glyma.09g280100.1.p locus=Glyma.09g280100 ID=Glyma.09g280100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGCCAAGACAACAACGTAGCATTGTCATCAAATTCATTTTTAGCTTACAAATCTGCTAAGGTGTTTGTCGCTGGCCACCGAGGTCTTGTTGGCTCGGCCATAGTTCGCAAGCTCACTCAACTTGGGTTCACTAATCTGGTCTTGCACTCCCATGCCGAGCTTGATCTCACTCGACAATCTGATGTTGAAGCCTTCTTTGCCTCTGAAAAACCTGAATTTGTCATTGTAGCTGCAGCCAAAGTTGGTGGCATCCATGCCAACAACACCTACCCTGCCGATTTCATTGCCATCAACCTCCAAATCCAGACCAATGTCATTGATTCTGCTTATCGCAACGGTGCTAAGAAACTATTGTTTTTGGGTTCCTCTTGTATTTACCCCAAATATGCACCCCAACCGATTCCGGAAGATGCTTTGCTTACTGGACCGTTAGAGCCCACCAATGAATGGTATGCCATTGCCAAGATTGCTGGGATCAAAATGTGCCAGGCTTACAGAATTCAGCATAAGTGGGATGCAATTTCTGGAATGCCCACCAACTTATATGGACCATACGACAATTTTCACCCCGAGAATTCACATGTGTTACCTGCTCTCATGAGGAGGTTTCATGAGGCAAAGGTCAATGGTGCCAAGGAGGTGGTGGTGTGGGGCACAGGAAGTCCATTGAGGGAATTCTTGCACGTCGACGATTTGGCAGATGCAGTTGTCTTCATGATGGAAAAGTATAGCGGACTTGAGCATTTGAATGTAGGGAGTGGAAAGGAGGTTACTATTAAGGAATTGGCCGAGTTGATGAAGGAAGTGGTGGGATTTGAGGGTGATCTTGTTTGGGATTCTACGAAGCCAGATGGGACTCCAAGGAAGCTGATGGATAGCTCCAAACTTGCAAGTCTGGGTTGGACACCAAAAGTCTCACTCAAGGATGGGCTTGCTGATACCTACAAATGGTACTTGGAGAACGTCAATCTATGA
Predicted protein sequences of Glyma.09g280100
>Glyma.09g280100.1.p sequence-type=predicted peptide transcript=Glyma.09g280100.1 locus=Glyma.09g280100 ID=Glyma.09g280100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSQDNNVALSSNSFLAYKSAKVFVAGHRGLVGSAIVRKLTQLGFTNLVLHSHAELDLTRQSDVEAFFASEKPEFVIVAAAKVGGIHANNTYPADFIAINLQIQTNVIDSAYRNGAKKLLFLGSSCIYPKYAPQPIPEDALLTGPLEPTNEWYAIAKIAGIKMCQAYRIQHKWDAISGMPTNLYGPYDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMEKYSGLEHLNVGSGKEVTIKELAELMKEVVGFEGDLVWDSTKPDGTPRKLMDSSKLASLGWTPKVSLKDGLADTYKWYLENVNL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo