SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09g278300

Feature Type:gene_model
Chromosome:Gm09
Start:49368328
stop:49369485
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g278300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38400.2AT alanine:glyoxylate aminotransferase 3 JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008453GO-mf alanine-glyoxylate transaminase activity EnsemblGenomesN/AIEA
GO:0008483GO-mf transaminase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0042802GO-mf identical protein binding EnsemblGenomesN/AIEA
PTHR11986Panther AMINOTRANSFERASE CLASS III JGI N/AIEA
PTHR11986:SF23Panther ACETYLORNITHINE AMINOTRANSFERASE, MITOCHONDRIAL JGI N/AIEA
GLYSYN-ALA-PWYSoyCyc9 glycine biosynthesis III Plant Metabolic Network ISS
GN7V-66748SoyCyc9-rxn alanine-glyoxylate transaminase Plant Metabolic Network ISS

Expression Patterns of Glyma.09g278300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g278300 not represented in the dataset
Glyma.09g278300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g278300
ParalogEvidenceComments
Glyma.18g210500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g278300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.09g278300
>Glyma.09g278300.1 sequence-type=CDS polypeptide=Glyma.09g278300.1.p locus=Glyma.09g278300 ID=Glyma.09g278300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGCTTGGAGTTGAACTTGTCAGTGATCGCGAACTTAAAACACCAGCACAAAATGAAACACTGCATGTGATGGACCAAATGAAAGAATTAGGAGTGTTGATTGGAAAGGGTGGCTATTATGGAAATGTATTCAGAATTACACCAAAGAAGATGCAGACTTCCTTGTGGATGCGATGGACTACACATTTTCCAAGTGAACCAAACACACCAGTAGAACATCAATGTAGAGACTCTAGCAAGCCAAATTTCTAA
Predicted protein sequences of Glyma.09g278300
>Glyma.09g278300.1.p sequence-type=predicted peptide transcript=Glyma.09g278300.1 locus=Glyma.09g278300 ID=Glyma.09g278300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMLGVELVSDRELKTPAQNETLHVMDQMKELGVLIGKGGYYGNVFRITPKKMQTSLWMRWTTHFPSEPNTPVEHQCRDSSKPNF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo