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Report for Sequence Feature Glyma.09g278000

Feature Type:gene_model
Chromosome:Gm09
Start:49336440
stop:49337809
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g278000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38540.1AT lipid transfer protein 1 JGI N/AIEA
GO:0006869GO-bp lipid transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0008289GO-mf lipid binding EnsemblGenomesN/AIEA
PF00234PFAM Protease inhibitor/seed storage/LTP family JGI N/AIEA

Expression Patterns of Glyma.09g278000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g278000
ParalogEvidenceComments
Glyma.18g210900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g278000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g41460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g278000
>Glyma.09g278000.1 sequence-type=CDS polypeptide=Glyma.09g278000.1.p locus=Glyma.09g278000 ID=Glyma.09g278000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGCTTAAAGGTTGCATGTGTGGTTTTGATGTGCATGGCTGTGATGAGTGCACCAATGATGGTGCAAGCCGTGTCATGCAATGATGTTTCTGTGAACCTAGCACCGTGCCTATCTTACCTGATGCAGGGTGGAGATGTTCCAGAATCGTGCTGTAGCGGAGTGAGGAACATTCTGGGTTCTGCCAGCACCACCTTTGACAAACAAACCGTGTGCAAATGTCTTCAGCAAGCTGCTAATAACTATGGCATCAACGACGAATACGCTCAGGCACTCCCCGCCCGCTGCAATGTCAGCGTCCCTTACAAGATCAGCCGATCCACCAACTGCGACTCCATCAAGTTCTAA
Predicted protein sequences of Glyma.09g278000
>Glyma.09g278000.1.p sequence-type=predicted peptide transcript=Glyma.09g278000.1 locus=Glyma.09g278000 ID=Glyma.09g278000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLKVACVVLMCMAVMSAPMMVQAVSCNDVSVNLAPCLSYLMQGGDVPESCCSGVRNILGSASTTFDKQTVCKCLQQAANNYGINDEYAQALPARCNVSVPYKISRSTNCDSIKF*






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