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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G08740.1 | AT | elongation factor P (EF-P) family protein | JGI | N/A | IEA |
| GO:0006414 | GO-bp | translational elongation | EnsemblGenomes | N/A | IEA |
| GO:0006414 | GO-bp | translational elongation | JGI | N/A | IEA |
| GO:0043043 | GO-bp | peptide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0043043 | GO-bp | peptide biosynthetic process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0003746 | GO-mf | translation elongation factor activity | EnsemblGenomes | N/A | IEA |
| GO:0003746 | GO-mf | translation elongation factor activity | JGI | N/A | IEA |
| PF01132 | PFAM | Elongation factor P (EF-P) OB domain | JGI | N/A | IEA |
| PF08207 | PFAM | Elongation factor P (EF-P) KOW-like domain | JGI | N/A | IEA |
| PF09285 | PFAM | Elongation factor P, C-terminal | JGI | N/A | IEA |
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Glyma.09g275000 not represented in the dataset |
Glyma.09g275000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g213900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g41150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g275000.2 sequence-type=transcript locus=Glyma.09g275000 ID=Glyma.09g275000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ACCTGAATTGAGGCAAAGTGGCAGTTCAGGTGGCGAAAGAGAAGAAGTTCTCTTATCTTCTTTGTAAGAATAACGAAGCATTCTATTCTGCACTTGGGAGAAAGTAACAACAATGGTGGCGGGAACTGCAACCTTGAAGCTTAATCTCTCCGATTTTTCTTCTCCAATGTCAAGTTTCAGCGcttcttcctcttcttcttcattcccctttcttctttcaatgcgaaccccttcttcttcttctAAACCCCGATTTCTCAGGATTTACGCCTTGACCAGCAACGACATCAAGGTCGGCACCAACCTCGAAGTCGATGGTGCTCCTTGGCGCGTGTTAGAGTTTCTTCACGTTAAGCCGGGAAAAGGCGCGGCGTTTGTGAGGACCAAGATGAAGAATTATATTACAGGGAACACGGTGGAGAAAACGTTTAGAGCTGGAAGCTCGATTGAGCAAGCAGATGTATTCAAAGAAACAAAGCAGTTTACATATAAAGATGGTGTTCAATTTGTCTTCATGGACTTGAATACATATGAGGAGTTTCGTCTGGGTGAAAAGGAAATTGGAGACAGAACAAAATGGCTAAAAGAAGGAATGGACTGTAATTTGCTGTTATGGAATGGAAAAGTAATCATCTCATCTCATAATATATTATGTCTTTCACTATTGTTGCAAGTCTCACATCGGGTGGTTAACGAGCATGGTTATTGATGTTGAACTCCCTATCACAATCAAGCTTACTGTAGTTGATGTGGATCCAGGACTTAAGGGTGACACGGCCCAAGGCGGAACAAAACCAGCCACCCTCGACACCAGCGCTGTTGTCAATGTCCCACTCTTTGTAAATGTCGGTGATGAAATATTGGTTGATTCAAGAACTGGGCAGTACATGAGCCGTGCTTAAGATTTCGCATCAAGTTTTGTAGTTGAAGTCCTGAGAATTCTCATTTGTTTTGTTCTTTTATTTTTTAGGATATAATTTACCAACGGAGATGGATTAAGTTCATTAAGCTTGGCAAATTGGCTGTGTTTTGTGACATTGAGTTAAAATTGTGTTGTAGTTTAGTTGCGAAACTAAAGCTCGTGGTGCATTTTTACATAAAAGCTAGCCATTATTAACCTTTGTTCCTTGCGATGAACAGAGAATAAATTGATACAGTTTATGCAGTGTTTTCTTTATTATC
>Glyma.09g275000.1 sequence-type=CDS polypeptide=Glyma.09g275000.1.p locus=Glyma.09g275000 ID=Glyma.09g275000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGGCGGGAACTGCAACCTTGAAGCTTAATCTCTCCGATTTTTCTTCTCCAATGTCAAGTTTCAGCGCTTCTTCCTCTTCTTCTTCATTCCCCTTTCTTCTTTCAATGCGAACCCCTTCTTCTTCTTCTAAACCCCGATTTCTCAGGATTTACGCCTTGACCAGCAACGACATCAAGGTCGGCACCAACCTCGAAGTCGATGGTGCTCCTTGGCGCGTGTTAGAGTTTCTTCACGTTAAGCCGGGAAAAGGCGCGGCGTTTGTGAGGACCAAGATGAAGAATTATATTACAGGGAACACGGTGGAGAAAACGTTTAGAGCTGGAAGCTCGATTGAGCAAGCAGATGTATTCAAAGAAACAAAGCAGTTTACATATAAAGATGGTGTTCAATTTGTCTTCATGGACTTGAATACATATGAGGAGTTTCGTCTGGGTGAAAAGGAAATTGGAGACAGAACAAAATGGCTAAAAGAAGGAATGGACTGTAATTTGCTGTTATGGAATGGAAAAGTTATTGATGTTGAACTCCCTATCACAATCAAGCTTACTGTAGTTGATGTGGATCCAGGACTTAAGGGTGACACGGCCCAAGGCGGAACAAAACCAGCCACCCTCGACACCAGCGCTGTTGTCAATGTCCCACTCTTTGTAAATGTCGGTGATGAAATATTGGTTGATTCAAGAACTGGGCAGTACATGAGCCGTGCTTAA >Glyma.09g275000.2 sequence-type=CDS polypeptide=Glyma.09g275000.2.p locus=Glyma.09g275000 ID=Glyma.09g275000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGGCGGGAACTGCAACCTTGAAGCTTAATCTCTCCGATTTTTCTTCTCCAATGTCAAGTTTCAGCGCTTCTTCCTCTTCTTCTTCATTCCCCTTTCTTCTTTCAATGCGAACCCCTTCTTCTTCTTCTAAACCCCGATTTCTCAGGATTTACGCCTTGACCAGCAACGACATCAAGGTCGGCACCAACCTCGAAGTCGATGGTGCTCCTTGGCGCGTGTTAGAGTTTCTTCACGTTAAGCCGGGAAAAGGCGCGGCGTTTGTGAGGACCAAGATGAAGAATTATATTACAGGGAACACGGTGGAGAAAACGTTTAGAGCTGGAAGCTCGATTGAGCAAGCAGATGTATTCAAAGAAACAAAGCAGTTTACATATAAAGATGGTGTTCAATTTGTCTTCATGGACTTGAATACATATGAGGAGTTTCGTCTGGGTGAAAAGGAAATTGGAGACAGAACAAAATGGCTAAAAGAAGGAATGGACTGTAATTTGCTGTTATGGAATGGAAAAGTAATCATCTCATCTCATAATATATTATGTCTTTCACTATTGTTGCAAGTCTCACATCGGGTGGTTAACGAGCATGGTTATTGA
>Glyma.09g275000.1.p sequence-type=predicted peptide transcript=Glyma.09g275000.1 locus=Glyma.09g275000 ID=Glyma.09g275000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVAGTATLKLNLSDFSSPMSSFSASSSSSSFPFLLSMRTPSSSSKPRFLRIYALTSNDIKVGTNLEVDGAPWRVLEFLHVKPGKGAAFVRTKMKNYITGNTVEKTFRAGSSIEQADVFKETKQFTYKDGVQFVFMDLNTYEEFRLGEKEIGDRTKWLKEGMDCNLLLWNGKVIDVELPITIKLTVVDVDPGLKGDTAQGGTKPATLDTSAVVNVPLFVNVGDEILVDSRTGQYMSRA* >Glyma.09g275000.2.p sequence-type=predicted peptide transcript=Glyma.09g275000.2 locus=Glyma.09g275000 ID=Glyma.09g275000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVAGTATLKLNLSDFSSPMSSFSASSSSSSFPFLLSMRTPSSSSKPRFLRIYALTSNDIKVGTNLEVDGAPWRVLEFLHVKPGKGAAFVRTKMKNYITGNTVEKTFRAGSSIEQADVFKETKQFTYKDGVQFVFMDLNTYEEFRLGEKEIGDRTKWLKEGMDCNLLLWNGKVIISSHNILCLSLLLQVSHRVVNEHGY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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