Glyma.09g274900

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.09g274900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.09g274900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.09g274900

Feature Type:	gene_model
Chromosome:	Gm09
Start:	49069946
stop:	49073277
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g274900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02280.1	AT	SNARE-like superfamily protein	JGI	N/A	IEA
GO:0006888	GO-bp	ER to Golgi vesicle-mediated transport	EnsemblGenomes	N/A	IEA
GO:0006888	GO-bp	ER to Golgi vesicle-mediated transport	JGI	N/A	IEA
GO:0016192	GO-bp	vesicle-mediated transport	EnsemblGenomes	N/A	IEA
GO:0065009	GO-bp	regulation of molecular function	EnsemblGenomes	N/A	IEA
GO:0005622	GO-cc	intracellular	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005801	GO-cc	cis-Golgi network	JGI	N/A	IEA
GO:0030008	GO-cc	TRAPP complex	EnsemblGenomes	N/A	IEA
GO:0017112	GO-mf	Rab guanyl-nucleotide exchange factor activity	EnsemblGenomes	N/A	IEA
KOG3368	KOG	Transport protein particle (TRAPP) complex subunit	JGI	N/A	IEA
PTHR23249	Panther	SYNBINDIN	JGI	N/A	IEA
PTHR23249:SF2	Panther		JGI	N/A	IEA
PF04099	PFAM	Sybindin-like family	JGI	N/A	IEA

Expression Patterns of Glyma.09g274900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g274900 not represented in the dataset	Glyma.09g274900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.09g274900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g41140	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g274900

Limit To All Plant Sequences

>Glyma.09g274900.2 sequence-type=transcript locus=Glyma.09g274900 ID=Glyma.09g274900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCATACTCTCATTTTTCTTTCTCTGGTCTCTGGTCATAAATCGTGTCGTGATTTCCCCCATTCTAGAGTATTCTGGATAAGTTTTTGGAATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAAATTTATATATGACTCTTCTAATTTCTATATTCTGATGAGTACATATAATCTGAAAATTGTCATTCAATTTCTTGTAAGGGACGAGTTTCTTTTACTACTCCTAGCCTTTGTATTTTATCAAGATTTACAATGTCTAAGACAAGTTTCCAGACATACGAGATTCTGCATTTCGAGCAATGTTTTTCATATGGTAGTAGTTAG

>Glyma.09g274900.3 sequence-type=transcript locus=Glyma.09g274900 ID=Glyma.09g274900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATACTCTCATTTTTCTTTCTCTGGTCTCTGGTCATAAATCGTGTCGTGATTTCCCCCATTCTAGAGTGTGAATTCTGGATAAGTTTTTGGAATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAAATTTATATATGACTCTTCTAATTTCTATATTCTGATGAGTACATATAATCTGAAAATTGTCATTCAATTTCTTGTAAGGGACGAGTTTCTTTTACTACTCCTAGCCTTTGTATTTTATCAAGATTTACAATGTCTAAGACAAGTTTCCAGACATACGAGATTCTGCATTTCGAGCAATGTTTTTCATATGGTAGTAGTTAG

>Glyma.09g274900.4 sequence-type=transcript locus=Glyma.09g274900 ID=Glyma.09g274900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATACTCTCATTTTTCTTTCTCTGGTCTCTGGTCATAAATCGTGTCGTGATTTCCCCCATTCTAGAGTGTGAGTGAGCACCCTGCTTCGATTGGCCTCTGCCTCTTCCTTTGTTTGAATGGTTTTCGTTGCAAATTCTGGATAAGTTTTTGGAATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAAATTTATATATGACTCTTCTAATTTCTATATTCTGATGAGTACATATAATCTGAAAATTGTCATTCAATTTCTTGTAAGGGACGAGTTTCTTTTACTACTCCTAGCCTTTGTATTTTATCAAGATTTACAATGTCTAAGACAAGTTTCCAGACATACGAGATTCTGCATTTCGAGCAATGTTTTTCATATGGTAGTAGTTAG

Coding sequences of Glyma.09g274900

Limit To All Plant Sequences

>Glyma.09g274900.1 sequence-type=CDS polypeptide=Glyma.09g274900.1.p locus=Glyma.09g274900 ID=Glyma.09g274900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAA

>Glyma.09g274900.2 sequence-type=CDS polypeptide=Glyma.09g274900.2.p locus=Glyma.09g274900 ID=Glyma.09g274900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAA

>Glyma.09g274900.3 sequence-type=CDS polypeptide=Glyma.09g274900.3.p locus=Glyma.09g274900 ID=Glyma.09g274900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAA

>Glyma.09g274900.4 sequence-type=CDS polypeptide=Glyma.09g274900.4.p locus=Glyma.09g274900 ID=Glyma.09g274900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCAATTTGCAGTCTTTACATCATCAATAAGTCTGGTGGATTGATATACTATAAGGATTATGGGTCTGCTGGACGAATGGATACCAATGACAGCTTGCGGGTGGCAAGTTTATGGCACTCAATGCATGCTATCTCTCAGCAGTTATCACCTGTTTCAGGTTGTTTAGGAATTGAACTTCTTCAAGCTGATACTTTTGATCTTCATTGCTTTCAATCACTGACAGGAACAAAAATCTTTGTGGTGTGTGAGCCTGGAGCACAATACATGGAAAGTTTATTGAAATTTGTCTATGAATTGTACACGGACTACGTTTTGAAGAATCCGTTCTATGAGATGGAGATGCCTATACGTTGTGAGCTCTTCGATATCAACCTAACACAGGCAGTACAAAAGGATCGTGTTGCATTTTTGGGCCGATAA

Predicted protein sequences of Glyma.09g274900

Limit To All Plant Sequences

>Glyma.09g274900.1.p sequence-type=predicted peptide transcript=Glyma.09g274900.1 locus=Glyma.09g274900 ID=Glyma.09g274900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAICSLYIINKSGGLIYYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVSGCLGIELLQADTFDLHCFQSLTGTKIFVVCEPGAQYMESLLKFVYELYTDYVLKNPFYEMEMPIRCELFDINLTQAVQKDRVAFLGR*

>Glyma.09g274900.2.p sequence-type=predicted peptide transcript=Glyma.09g274900.2 locus=Glyma.09g274900 ID=Glyma.09g274900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAICSLYIINKSGGLIYYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVSGCLGIELLQADTFDLHCFQSLTGTKIFVVCEPGAQYMESLLKFVYELYTDYVLKNPFYEMEMPIRCELFDINLTQAVQKDRVAFLGR*

>Glyma.09g274900.3.p sequence-type=predicted peptide transcript=Glyma.09g274900.3 locus=Glyma.09g274900 ID=Glyma.09g274900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAICSLYIINKSGGLIYYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVSGCLGIELLQADTFDLHCFQSLTGTKIFVVCEPGAQYMESLLKFVYELYTDYVLKNPFYEMEMPIRCELFDINLTQAVQKDRVAFLGR*

>Glyma.09g274900.4.p sequence-type=predicted peptide transcript=Glyma.09g274900.4 locus=Glyma.09g274900 ID=Glyma.09g274900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAICSLYIINKSGGLIYYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVSGCLGIELLQADTFDLHCFQSLTGTKIFVVCEPGAQYMESLLKFVYELYTDYVLKNPFYEMEMPIRCELFDINLTQAVQKDRVAFLGR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain