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Report for Sequence Feature Glyma.09g271700

Feature Type:gene_model
Chromosome:Gm09
Start:48833557
stop:48840771
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g271700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38610.1AT RNA-binding KH domain-containing protein JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
KOG1588 KOG RNA-binding protein Sam68 and related KH domain proteins JGI N/AIEA
PTHR11208Panther RNA-BINDING PROTEIN RELATED JGI N/AIEA
PTHR11208:SF25Panther JGI N/AIEA
PF00013PFAM KH domain JGI N/AIEA

Expression Patterns of Glyma.09g271700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g271700
ParalogEvidenceComments
Glyma.18g217500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g271700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g40820 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g271700
>Glyma.09g271700.2 sequence-type=transcript locus=Glyma.09g271700 ID=Glyma.09g271700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTCTTTTTCGTTTTTCTCCTTATTACAGACCCCCCTTAATTGATGGTGCTCTGTATCCCCTTTTTCTTCTGCAAGAACTACACCAACTAAAACcttctttttcaacttttttttttttggtttgtttttcttcttcttctccttcttcCAATCCTTAAGGAAAAAAGAAACTAAAGAAAAAAAGTGAGCCATGTCAGGCTTGTATAATCCCAACTTCTCTCCTGCTAGAGCTGCTTCTCCTCAGATTAGGAGCAATCCAGAAGTGGACAGCCAGTACCTATCAGAGTTGCTGGCAGAACATCAGAAGCTTGGACCCTTCATGCAAGTGCTTCCCATATGCAGCCGCCTCCTAAATCAAGAAATATTAAGAGTTTCTGGAATGTTGTCCAATCAAGGTTTTGGTGACTTTGATAGACTGCGACATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTTATGTCCAATGTAAGTGGGACAGGGTTGGGTGGATGGAATAGTCTTCAGCAAGAGAGATTATGTGGAGCCCCTGGAATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCGTTCACTGTTAAGAGAATCTTGCGCTTGGAAATTCCAGTAGATACATATCCCAATTTCAATTTTGTTGGAAGACTTCTGGGGCCTAGAGGAAATTCTTTGAAACGGGTTGAAGCTACAACTGGTTGTCGTGTGTATATTAGAGGAAAAGGGTCGATAAAGGATCCAGACAAGGAAGAGAAATTACGAGGAAGACCGGGCTATGAGCATCTCAATGAACCACTGCACATTTTGATTGAGGCTGATTTACCTGCTAATGTTGTTGACATAAGGCTCAGGCAGGCTCAGGAAATTATTGAAGAACTGCTCAAGCCTGTGGATGAGTCACAGGACTACATCAAGAGGCAGCAATTGCGTGAACTTGCTTTGCTGAATTCAAATTTCAGAGAAGAGAGTCCTGGACCAAGTGGTAGTGTGTCCCCATTCAACTCTAGTGGAATGAAACGTGCAAAGACGGGTCGCTGAGTTGTTCTTGATTGATGGTGTAGATGATGAGTATTGTGGTCCTCCAGCCATTGATTGCTGGGAATATCTTCCAGTACATGATGTCTCATTCAATGCAAGCTATAAAAGAATAGGCTAACAATTCTTGCTGGTTAGCACTCTGGTGGTTTTTCCTTCCCCTTTGTCCCTACCTTTTTCTTCTTGAACAGACAGGAGACAAAGCTGGAATGAAGAATTTTTAAAAGAGAAAAAAATTATATAGTTGGGGTATTGAGAATAGGTTTGTTCAAACCAACCCTTTTTTTTTCTTCCCCTTGCAAACTTAATACATTCATTGGATTTATTCATGTGTCAGTTACTTTTTGAGAAGTGTGGAATATATACATGTGATGGTTGGTGGTGATGAAGTTTTAGGTCCTAAGACAATGCAGTGTTTATTGGCATGTGACATTGTCAAAGTCTCATGGTATTTTAATATTTATTATAAGTTAGCATAGGCTGGATTCTTTTTAGTTGTTTGTCACAGGCATTTGTATTCTCTTCGGAGGACTATGCACTGTAATTGGAATGATGCATGTCAGATAAACTTCTTACCATGTACCATTAAAGAACAAATGTGGTATTTGTTTATATAGAATGGTACATATAAATCTTATGCAAATTGTTTGATTTTTGCCACCCTATTGAATGCAGATGGACAGTG
Coding sequences of Glyma.09g271700
>Glyma.09g271700.1 sequence-type=CDS polypeptide=Glyma.09g271700.1.p locus=Glyma.09g271700 ID=Glyma.09g271700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGGCTTGTATAATCCCAACTTCTCTCCTGCTAGAGCTGCTTCTCCTCAGATTAGGAGCAATCCAGAAGTGGACAGCCAGTACCTATCAGAGTTGCTGGCAGAACATCAGAAGCTTGGACCCTTCATGCAAGTGCTTCCCATATGCAGCCGCCTCCTAAATCAAGAAATATTAAGAGTTTCTGGAATGTTGTCCAATCAAGGTTTTGGTGACTTTGATAGACTGCGACATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTTATGTCCAATGTAAGTGGGACAGGGTTGGGTGGATGGAATAGTCTTCAGCAAGAGCAGAGATTATGTGGAGCCCCTGGAATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCGTTCACTGTTAAGAGAATCTTGCGCTTGGAAATTCCAGTAGATACATATCCCAATTTCAATTTTGTTGGAAGACTTCTGGGGCCTAGAGGAAATTCTTTGAAACGGGTTGAAGCTACAACTGGTTGTCGTGTGTATATTAGAGGAAAAGGGTCGATAAAGGATCCAGACAAGGAAGAGAAATTACGAGGAAGACCGGGCTATGAGCATCTCAATGAACCACTGCACATTTTGATTGAGGCTGATTTACCTGCTAATGTTGTTGACATAAGGCTCAGGCAGGCTCAGGAAATTATTGAAGAACTGCTCAAGCCTGTGGATGAGTCACAGGACTACATCAAGAGGCAGCAATTGCGTGAACTTGCTTTGCTGAATTCAAATTTCAGAGAAGAGAGTCCTGGACCAAGTGGTAGTGTGTCCCCATTCAACTCTAGTGGAATGAAACGTGCAAAGACGGGTCGCTGA

>Glyma.09g271700.2 sequence-type=CDS polypeptide=Glyma.09g271700.2.p locus=Glyma.09g271700 ID=Glyma.09g271700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGGCTTGTATAATCCCAACTTCTCTCCTGCTAGAGCTGCTTCTCCTCAGATTAGGAGCAATCCAGAAGTGGACAGCCAGTACCTATCAGAGTTGCTGGCAGAACATCAGAAGCTTGGACCCTTCATGCAAGTGCTTCCCATATGCAGCCGCCTCCTAAATCAAGAAATATTAAGAGTTTCTGGAATGTTGTCCAATCAAGGTTTTGGTGACTTTGATAGACTGCGACATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTTATGTCCAATGTAAGTGGGACAGGGTTGGGTGGATGGAATAGTCTTCAGCAAGAGAGATTATGTGGAGCCCCTGGAATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCGTTCACTGTTAAGAGAATCTTGCGCTTGGAAATTCCAGTAGATACATATCCCAATTTCAATTTTGTTGGAAGACTTCTGGGGCCTAGAGGAAATTCTTTGAAACGGGTTGAAGCTACAACTGGTTGTCGTGTGTATATTAGAGGAAAAGGGTCGATAAAGGATCCAGACAAGGAAGAGAAATTACGAGGAAGACCGGGCTATGAGCATCTCAATGAACCACTGCACATTTTGATTGAGGCTGATTTACCTGCTAATGTTGTTGACATAAGGCTCAGGCAGGCTCAGGAAATTATTGAAGAACTGCTCAAGCCTGTGGATGAGTCACAGGACTACATCAAGAGGCAGCAATTGCGTGAACTTGCTTTGCTGAATTCAAATTTCAGAGAAGAGAGTCCTGGACCAAGTGGTAGTGTGTCCCCATTCAACTCTAGTGGAATGAAACGTGCAAAGACGGGTCGCTGA
Predicted protein sequences of Glyma.09g271700
>Glyma.09g271700.1.p sequence-type=predicted peptide transcript=Glyma.09g271700.1 locus=Glyma.09g271700 ID=Glyma.09g271700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGLYNPNFSPARAASPQIRSNPEVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLQQEQRLCGAPGMTMDWQSAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKTGR*

>Glyma.09g271700.2.p sequence-type=predicted peptide transcript=Glyma.09g271700.2 locus=Glyma.09g271700 ID=Glyma.09g271700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGLYNPNFSPARAASPQIRSNPEVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLQQERLCGAPGMTMDWQSAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKTGR*






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