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Report for Sequence Feature Glyma.09g269600

Feature Type:gene_model
Chromosome:Gm09
Start:48678731
stop:48681590
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g269600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45400.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0006694GO-bp steroid biosynthetic process JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003854GO-mf 3-beta-hydroxy-delta5-steroid dehydrogenase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0050662GO-mf coenzyme binding EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
KOG1502 KOG Flavonol reductase/cinnamoyl-CoA reductase JGI N/AIEA
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI N/AIEA
PTHR10366:SF9Panther JGI N/AIEA
PF01370PFAM NAD dependent epimerase/dehydratase family JGI N/AIEA
PWY-2055SoyCyc9 superpathway of pterocarpan biosynthesis (via daidzein) Plant Metabolic Network ISS
PWY-2229SoyCyc9 superpathway of pterocarpan biosynthesis (via formononetin) Plant Metabolic Network ISS
PWY-2463SoyCyc9 (-)-medicarpin biosynthesis Plant Metabolic Network ISS
PWY-2464SoyCyc9 (-)-maackiain biosynthesis Plant Metabolic Network ISS
PWY-2761SoyCyc9 (-)-glycinol biosynthesis Plant Metabolic Network ISS
PWY-5717SoyCyc9 superpathway of formononetin derivative biosynthesis Plant Metabolic Network ISS
GN7V-57809SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.09g269600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g269600 not represented in the dataset
Glyma.09g269600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g269600
ParalogEvidenceComments
Glyma.18g220500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g269600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g40590 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g269600
>Glyma.09g269600.2 sequence-type=transcript locus=Glyma.09g269600 ID=Glyma.09g269600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCAAAAGCTACCAACCAACATTGTTATATACACACACATAGCAAGCAGAACAAACATATCAGAAGTTAGCTGCATAACCCAGAGAAAAGTAAACACTGCAATAGGAAGAGTTTTCAAATGGCAGAGGGAAAAGGTAGAGTTTGTGTCACTGGAGGCACTGGGTTCCTTGGTTCATGGATCATCAAGAGACTCCTTGAAGATGGATATGCTGTTAACACCACTATTAGATCTGACCCAGGACGAAAGAGAGATGTTAGCTTCCTCACAAACCTACCAGGCGCATCCGAAAAGCTAAAAATTTTCAACGCTGATCTCAGCGACCCTGAAAGTTTTGATCCAGCAGTTGAGGGATGTGTTGGAATTTTCCACACAGCCACGCCAATTGATTTTGCAGTGAACGAGCCTGAGGAAGTGGTAACCAAAAGAGCCATCGATGGAGCACTAGGCATAATGAAAGCAGGCCTAAAAGCAAAGACAGTGAAGAGGGTTGTTTACACTTCTAGTGGCTCCACCGTTTCCTTCAGCAGCCTTGAAGAAAAAGATGTGGTGGATGAGAGTGTTTGGAGTGATGTGGATATGCTTAGGAGTGTAAAGCCTTTTGGTTGGTCCTATGCAGTTTCAAAGGTGTTGACTGAGAAGGCTGTGCTTGAATTTGGAGAACATAATGGGTTGGAAGTTGCAACTGTTATTGCTCCTTTTATTGTTGGTCCTTTTGTTTGTCCCAAGCTTCCTGACTCTATTGAAAAAGCTCTGCTTATGGTGTTGGGCAAAAAAGAAGAAATTGGTGTCATTCGTTACCATATGGTACATGTGGATGATGTGGCTAGAGCACATATCTTCCTGCTTGAGCATCCTAATCCAAAAGGGAGATATAATTGCTCACCATTCATTGTACCCATTGAAGAGATGGGTGAACTTCTTTCAGCCAAATACCCGGAATTTCAACTACCAACAGTAGAGTGAGTTCTATTCTCCTCCTT
Coding sequences of Glyma.09g269600
>Glyma.09g269600.1 sequence-type=CDS polypeptide=Glyma.09g269600.1.p locus=Glyma.09g269600 ID=Glyma.09g269600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGAGGGAAAAGGTAGAGTTTGTGTCACTGGAGGCACTGGGTTCCTTGGTTCATGGATCATCAAGAGACTCCTTGAAGATGGATATGCTGTTAACACCACTATTAGATCTGACCCAGGACGAAAGAGAGATGTTAGCTTCCTCACAAACCTACCAGGCGCATCCGAAAAGCTAAAAATTTTCAACGCTGATCTCAGCGACCCTGAAAGTTTTGATCCAGCAGTTGAGGGATGTGTTGGAATTTTCCACACAGCCACGCCAATTGATTTTGCAGTGAACGAGCCTGAGGAAGTGGTAACCAAAAGAGCCATCGATGGAGCACTAGGCATAATGAAAGCAGGCCTAAAAGCAAAGACAGTGAAGAGGGTTGTTTACACTTCTAGTGGCTCCACCGTTTCCTTCAGCAGCCTTGAAGAAAAAGATGTGGTGGATGAGAGTGTTTGGAGTGATGTGGATATGCTTAGGAGTGTAAAGCCTTTTGGTTGGTCCTATGCAGTTTCAAAGGTGTTGACTGAGAAGGCTGTGCTTGAATTTGGAGAACATAATGGGTTGGAAGTTGCAACTGTTATTGCTCCTTTTATTGTTGGTCCTTTTGTTTGTCCCAAGCTTCCTGACTCTATTGAAAAAGCTCTGCTTATGGTGTTGGGCAAAAAAGAAGAAATTGGTGTCATTCGTTACCATATGGTACATGTGGATGATGTGGCTAGAGCACATATCTTCCTGCTTGAGCATCCTAATCCAAAAGGGAGATATAATTGCTCACCATTCATTGTACCCATTGAAGAGATGGGTGAACTTCTTTCAGCCAAATACCCGGAATTTCAACTACCAACAGTAGACGAGCTGAAGGGAATTAAAGGTGCCAAGCAACCACATTTAACCTCCAAGAAACTTGTTGATGCTGGTTTTGAGTTCAAGTATAGCTTAGAGGACATGTTTCAGGATGCAATTGAATGCTGCAAGGAAAAGGGTTATCTTTAA

>Glyma.09g269600.2 sequence-type=CDS polypeptide=Glyma.09g269600.2.p locus=Glyma.09g269600 ID=Glyma.09g269600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGAGGGAAAAGGTAGAGTTTGTGTCACTGGAGGCACTGGGTTCCTTGGTTCATGGATCATCAAGAGACTCCTTGAAGATGGATATGCTGTTAACACCACTATTAGATCTGACCCAGGACGAAAGAGAGATGTTAGCTTCCTCACAAACCTACCAGGCGCATCCGAAAAGCTAAAAATTTTCAACGCTGATCTCAGCGACCCTGAAAGTTTTGATCCAGCAGTTGAGGGATGTGTTGGAATTTTCCACACAGCCACGCCAATTGATTTTGCAGTGAACGAGCCTGAGGAAGTGGTAACCAAAAGAGCCATCGATGGAGCACTAGGCATAATGAAAGCAGGCCTAAAAGCAAAGACAGTGAAGAGGGTTGTTTACACTTCTAGTGGCTCCACCGTTTCCTTCAGCAGCCTTGAAGAAAAAGATGTGGTGGATGAGAGTGTTTGGAGTGATGTGGATATGCTTAGGAGTGTAAAGCCTTTTGGTTGGTCCTATGCAGTTTCAAAGGTGTTGACTGAGAAGGCTGTGCTTGAATTTGGAGAACATAATGGGTTGGAAGTTGCAACTGTTATTGCTCCTTTTATTGTTGGTCCTTTTGTTTGTCCCAAGCTTCCTGACTCTATTGAAAAAGCTCTGCTTATGGTGTTGGGCAAAAAAGAAGAAATTGGTGTCATTCGTTACCATATGGTACATGTGGATGATGTGGCTAGAGCACATATCTTCCTGCTTGAGCATCCTAATCCAAAAGGGAGATATAATTGCTCACCATTCATTGTACCCATTGAAGAGATGGGTGAACTTCTTTCAGCCAAATACCCGGAATTTCAACTACCAACAGTAGAGTGA
Predicted protein sequences of Glyma.09g269600
>Glyma.09g269600.1.p sequence-type=predicted peptide transcript=Glyma.09g269600.1 locus=Glyma.09g269600 ID=Glyma.09g269600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEGKGRVCVTGGTGFLGSWIIKRLLEDGYAVNTTIRSDPGRKRDVSFLTNLPGASEKLKIFNADLSDPESFDPAVEGCVGIFHTATPIDFAVNEPEEVVTKRAIDGALGIMKAGLKAKTVKRVVYTSSGSTVSFSSLEEKDVVDESVWSDVDMLRSVKPFGWSYAVSKVLTEKAVLEFGEHNGLEVATVIAPFIVGPFVCPKLPDSIEKALLMVLGKKEEIGVIRYHMVHVDDVARAHIFLLEHPNPKGRYNCSPFIVPIEEMGELLSAKYPEFQLPTVDELKGIKGAKQPHLTSKKLVDAGFEFKYSLEDMFQDAIECCKEKGYL*

>Glyma.09g269600.2.p sequence-type=predicted peptide transcript=Glyma.09g269600.2 locus=Glyma.09g269600 ID=Glyma.09g269600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEGKGRVCVTGGTGFLGSWIIKRLLEDGYAVNTTIRSDPGRKRDVSFLTNLPGASEKLKIFNADLSDPESFDPAVEGCVGIFHTATPIDFAVNEPEEVVTKRAIDGALGIMKAGLKAKTVKRVVYTSSGSTVSFSSLEEKDVVDESVWSDVDMLRSVKPFGWSYAVSKVLTEKAVLEFGEHNGLEVATVIAPFIVGPFVCPKLPDSIEKALLMVLGKKEEIGVIRYHMVHVDDVARAHIFLLEHPNPKGRYNCSPFIVPIEEMGELLSAKYPEFQLPTVE*






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