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Report for Sequence Feature Glyma.09g269200

Feature Type:gene_model
Chromosome:Gm09
Start:48655605
stop:48661519
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g269200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G12110.1AT sterol-4alpha-methyl oxidase 1-1 JGI N/AIEA
GO:0006633GO-bp fatty acid biosynthetic process JGI N/AIEA
GO:0008610GO-bp lipid biosynthetic process EnsemblGenomesN/AIEA
GO:0016126GO-bp sterol biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005789GO-cc endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000254GO-mf C-4 methylsterol oxidase activity EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG0873 KOG C-4 sterol methyl oxidase JGI N/AIEA
PTHR11863Panther STEROL DESATURASE JGI N/AIEA
PTHR11863:SF21Panther JGI N/AIEA
PF04116PFAM Fatty acid hydroxylase superfamily JGI N/AIEA
GN7V-46004SoyCyc9-rxn methylsterol monooxygenase Plant Metabolic Network ISS

Expression Patterns of Glyma.09g269200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.09g269200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g40550 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g269200
>Glyma.09g269200.1 sequence-type=CDS polypeptide=Glyma.09g269200.1.p locus=Glyma.09g269200 ID=Glyma.09g269200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCCCTTACCATACCCTTGAAGGAGCACAAGTTGCACTAGGCAGAGGACTAACCCTTGCTGAGACAATATGGTTCAAATACTCTGCCAACAAACCTGATTTTGTTCTTCATTGCCACAACACTCTATTCTTGTGCTTATTTTACTCTATAGCTCCAATTCCTTTCGTATTAATGGAGCTTAGTGGGTATGAGAAGCTAAACAAACACAAAATTCAGCCCTCGGTTAAGAGATCATTCAAGGAAATGTTCAAGTGCTACAAAGATGTCATGGAGACCTTTGTCATTGCAGTTAGCCCACTACAGATAATTTCTTATCCCACCATCAAGTGGATTGGGATCAGAACTGGTTTGTCATTGCCATCAGGCTGGGAGTTATTTTGGCAATTATTTATTTACTTTGTCATAGAAGATTTTTCGAATTATTGGATTCATAGGATGCTCCATTGCAAGTGGGCATTTGAGAAGATTCACAAGGTTCATCATGAATATGTAGCACCAATTGGGCTCTCAGCACCTTATGCCCATTGGGCCGAGATAATCATATTGGGTATCCCCTCGTTTCTAGGCCCAGCACTGGTTCCTGGGCATATAACAACCTATTGGCTATGGTTCATTTTGCGACAGCTAGAAGCCATCGAGACTCATAGCGGGTATGATTTTCCTTGGAGTCCCACAAAATATATACCATTTTATGGAGGGCCTGCATACCATGACTACCATCACTACGTTGGTGGAAAAAGTCAAAGCAACTTTGCCTCAGTATTTACCTATTGTGACTACATTTACGGGACCCATAAGGGGTATCAATATCGGAAGCAGATGCGCAAGAAAAATTCTACTGACACCTTCATTGCCCAAAATTACAAGATGGATGGATAG
Predicted protein sequences of Glyma.09g269200
>Glyma.09g269200.1.p sequence-type=predicted peptide transcript=Glyma.09g269200.1 locus=Glyma.09g269200 ID=Glyma.09g269200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPYHTLEGAQVALGRGLTLAETIWFKYSANKPDFVLHCHNTLFLCLFYSIAPIPFVLMELSGYEKLNKHKIQPSVKRSFKEMFKCYKDVMETFVIAVSPLQIISYPTIKWIGIRTGLSLPSGWELFWQLFIYFVIEDFSNYWIHRMLHCKWAFEKIHKVHHEYVAPIGLSAPYAHWAEIIILGIPSFLGPALVPGHITTYWLWFILRQLEAIETHSGYDFPWSPTKYIPFYGGPAYHDYHHYVGGKSQSNFASVFTYCDYIYGTHKGYQYRKQMRKKNSTDTFIAQNYKMDG*






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