SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09g268200

Feature Type:gene_model
Chromosome:Gm09
Start:48572511
stop:48576260
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g268200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45440.1AT dihydrodipicolinate synthase JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0009089GO-bp lysine biosynthetic process via diaminopimelate EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008840GO-mf 4-hydroxy-tetrahydrodipicolinate synthase EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity JGI N/AIEA
PTHR12128Panther DIHYDRODIPICOLINATE SYNTHASE JGI N/AIEA
PF00701PFAM Dihydrodipicolinate synthetase family JGI N/AIEA
PWY-5097SoyCyc9 L-lysine biosynthesis VI Plant Metabolic Network ISS
PWY-724SoyCyc9 superpathway of L-lysine, L-threonine and L-methionine biosynthesis II Plant Metabolic Network ISS
GN7V-46484SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.09g268200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g268200
ParalogEvidenceComments
Glyma.18g221700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g268200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g40460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g268200
>Glyma.09g268200.1 sequence-type=CDS polypeptide=Glyma.09g268200.1.p locus=Glyma.09g268200 ID=Glyma.09g268200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACACTCAAGAGCCTCTGCTTCAGAGGAACTGCCTTTCCCGTTTGCCCCTCCAATGTCACCAACAATAGAAACTCCAGGAGCTCATATTGGAGGCCTGCACAAGCAGCCGTGAAGCCCAATTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATAGGACTTCTCCAGAGGACATAAAGGCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATTGGACAAGGGGCCGAAGGTATTATTGTTGGTGGGACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCTCACACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACCGAGCAAGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGTATGCTTGCTCACTTTCAAAGTGTGCTTTCCATGGGTCCCACAATAATCTACAATGTGCCTGCACGGACTGGTCAAGACATTCCCCCGCATGTAATTCAAACCTTAGCTGAAAGTGCTAACCTGGCTGGTGTCAAGGAGTGTGTGGGAAATGACCGGATCAAGCAGTATACAGATGATGGAATTGTTGTGTGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGGGCTACTGGTGTGATATCTGTTGTAAGCAACCTGGTTCCTGGTTTAATGCGAGAACTCATGTTTGGCGGCGTAAACCCTACACTAAATTCTAAGCTTTTGCCTCTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGTTTGAACACTGCTCTTGCTCAACTTGGAGTTGTCAGACCCGTTTTTAGGCTACCGTTTGTACCTCTCCCTGTGGACAAAAGGATAGAGTTTGCCAATTTGGTGAAGGAAATTGGTCGAGAGCATTTTGTTGGAAATAAAGATGTTGAGGTTCTTGATGACGATGACTTTTTCTTGGTTAGTCGTTATTAA
Predicted protein sequences of Glyma.09g268200
>Glyma.09g268200.1.p sequence-type=predicted peptide transcript=Glyma.09g268200.1 locus=Glyma.09g268200 ID=Glyma.09g268200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATLKSLCFRGTAFPVCPSNVTNNRNSRSSYWRPAQAAVKPNFHLPMRSFELKNRTSPEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEGIIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMLAHFQSVLSMGPTIIYNVPARTGQDIPPHVIQTLAESANLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVISVVSNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVDKRIEFANLVKEIGREHFVGNKDVEVLDDDDFFLVSRY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo