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Report for Sequence Feature Glyma.09g262700

Feature Type:gene_model
Chromosome:Gm09
Start:48029649
stop:48031686
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g262700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G43810.1AT Small nuclear ribonucleoprotein family protein JGI N/AIEA
AT3G59810.1AT Small nuclear ribonucleoprotein family protein JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0006397GO-bp mRNA processing EnsemblGenomesN/AIEA
GO:0008380GO-bp RNA splicing EnsemblGenomesN/AIEA
GO:0030490GO-bp maturation of SSU-rRNA EnsemblGenomesN/AIEA
GO:0000932GO-cc P-body EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005688GO-cc U6 snRNP EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0005732GO-cc small nucleolar ribonucleoprotein complex EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG1783 KOG Small nuclear ribonucleoprotein F JGI N/AIEA
PTHR11021Panther SMALL NUCLEAR RIBONUCLEOPROTEIN F (SNRNP-F) JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Expression Patterns of Glyma.09g262700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g262700
ParalogEvidenceComments
Glyma.18g229600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g262700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g39830 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g262700
>Glyma.09g262700.2 sequence-type=transcript locus=Glyma.09g262700 ID=Glyma.09g262700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCGTGCACATTGGTTGATTTTGAAACCCTAAAGTTTGGCCCTTTACACGTTTCTTGTCTTCTTATTATTTCCCCCATCTTTGTTTCGAGAAGCATTTGACGAAGAGAAAAGACAGTGAATTGCGGTTTCAATTCAACCCACTTCATCTCAGGTGTTTGAAGTTGAGATAAAATGAGTGGAACAGAGAAAGCAGGATCAGGAACCACGAAAACCCCTGCCGATTTTCTCAAATCCATTCGTGGGAGGCCGGTTGTTGTCAAGCTCAATTCTGGTGTTGATTACAGAGGTATACTTGCTTGTCTAGATGGCTATATGAATATTGCAATGGAGCAGACAGAGGAATACGTCAATGGACAATTGAAGAACAAGTATGGTGACGCTTTCATCCGAGGGAATAATGGTACTGATGTTTGAAATACAATGTTCTTTTTT

>Glyma.09g262700.3 sequence-type=transcript locus=Glyma.09g262700 ID=Glyma.09g262700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATTTGAAAAGGAATTGATTTCAGTTTATTACCCAATTCCATATTTGATAGTTTACATTGTGAATTTGCATATTGGTGCACTTGTCCACTGTAATAGTTGCATTTGTTATGTTATGCTTCTCTGTATGCATGAAGTAGGCTCACTCGTTTTGGCTAATCTTGCAGGTATACTTGCTTGTCTAGATGGCTATATGAATATTGCAATGGAGCAGACAGAGGAATACGTCAATGGACAATTGAAGAACAAGTATGGTGACGCTTTCATCCGAGGGAATAATGTTCTATACATTAGTACCTCAAAGAGGACTCTAGCAGAGGGGGCTTAGAAAGTATAGGAATCTGATTTTTTTGTTTTTGTTTGGAAGACGCTTATGAATTTTAAAAGCTTATTGGACTGCCATTATGTTGCAACTCTAGTCTATTGTAACTGATTTGCCCTGGTTATATTTTGAAGGTAAAGCGGTATGGCCAGTTTGTAAAATGCTTGTTGACATATTTTAGTAGAATATTCTATCCTGTTTTGGAAGTTCAAAATTGCAATAGAAACTGCTATTACTTTAGGGT
Coding sequences of Glyma.09g262700
>Glyma.09g262700.1 sequence-type=CDS polypeptide=Glyma.09g262700.1.p locus=Glyma.09g262700 ID=Glyma.09g262700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGGAACAGAGAAAGCAGGATCAGGAACCACGAAAACCCCTGCCGATTTTCTCAAATCCATTCGTGGGAGGCCGGTTGTTGTCAAGCTCAATTCTGGTGTTGATTACAGAGGTATACTTGCTTGTCTAGATGGCTATATGAATATTGCAATGGAGCAGACAGAGGAATACGTCAATGGACAATTGAAGAACAAGTATGGTGACGCTTTCATCCGAGGGAATAATGTTCTATACATTAGTACCTCAAAGAGGACTCTAGCAGAGGGGGCTTAG

>Glyma.09g262700.2 sequence-type=CDS polypeptide=Glyma.09g262700.2.p locus=Glyma.09g262700 ID=Glyma.09g262700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGGAACAGAGAAAGCAGGATCAGGAACCACGAAAACCCCTGCCGATTTTCTCAAATCCATTCGTGGGAGGCCGGTTGTTGTCAAGCTCAATTCTGGTGTTGATTACAGAGGTATACTTGCTTGTCTAGATGGCTATATGAATATTGCAATGGAGCAGACAGAGGAATACGTCAATGGACAATTGAAGAACAAGTATGGTGACGCTTTCATCCGAGGGAATAATGGTACTGATGTTTGA

>Glyma.09g262700.3 sequence-type=CDS polypeptide=Glyma.09g262700.3.p locus=Glyma.09g262700 ID=Glyma.09g262700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCTCTGTATGCATGAAGTAGGCTCACTCGTTTTGGCTAATCTTGCAGGTATACTTGCTTGTCTAGATGGCTATATGAATATTGCAATGGAGCAGACAGAGGAATACGTCAATGGACAATTGAAGAACAAGTATGGTGACGCTTTCATCCGAGGGAATAATGTTCTATACATTAGTACCTCAAAGAGGACTCTAGCAGAGGGGGCTTAG
Predicted protein sequences of Glyma.09g262700
>Glyma.09g262700.1.p sequence-type=predicted peptide transcript=Glyma.09g262700.1 locus=Glyma.09g262700 ID=Glyma.09g262700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGTEKAGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA*

>Glyma.09g262700.2.p sequence-type=predicted peptide transcript=Glyma.09g262700.2 locus=Glyma.09g262700 ID=Glyma.09g262700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGTEKAGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNGTDV*

>Glyma.09g262700.3.p sequence-type=predicted peptide transcript=Glyma.09g262700.3 locus=Glyma.09g262700 ID=Glyma.09g262700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLCMHEVGSLVLANLAGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA*






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