Glyma.09g258700

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Report for Sequence Feature Glyma.09g258700

Feature Type:	gene_model
Chromosome:	Gm09
Start:	47736839
stop:	47740513
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g258700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29910.1	AT	origin recognition complex protein 5	JGI	N/A	IEA
GO:0006260	GO-bp	DNA replication	EnsemblGenomes	N/A	IEA
GO:0006260	GO-bp	DNA replication	JGI	N/A	IEA
GO:0006270	GO-bp	DNA replication initiation	EnsemblGenomes	N/A	IEA
GO:0000808	GO-cc	origin recognition complex	EnsemblGenomes	N/A	IEA
GO:0000808	GO-cc	origin recognition complex	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0005664	GO-cc	nuclear origin of replication recognition complex	EnsemblGenomes	N/A	IEA
GO:0003688	GO-mf	DNA replication origin binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
KOG2543	KOG	Origin recognition complex, subunit 5	JGI	N/A	IEA
PTHR12705	Panther	ORIGIN RECOGNITION COMPLEX SUBUNIT 5	JGI	N/A	IEA
PF01637	PFAM	Archaeal ATPase	JGI	N/A	IEA

Expression Patterns of Glyma.09g258700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g258700 not represented in the dataset	Glyma.09g258700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g258700

Paralog	Evidence	Comments
Glyma.18g234000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g258700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g39460	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g258700

Limit To All Plant Sequences

>Glyma.09g258700.2 sequence-type=transcript locus=Glyma.09g258700 ID=Glyma.09g258700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGGCGCCATCACTGTTCAGCGTGCAACCTTAAACATACTCTTAAAAGTCATTTATCTTACTTTATTTTTTCCGCAGATCCTATTTATTTCTTATTTCTTATATAATATAAAATCGTCGCTCGTCACGGTTCCGGCAGTGCTTTTCCGCCGCCGTCGCGGTTCAAACTTGAAAAGAAGTTAAGGATCTTCAGCAGCAGAAACAATGGATGAAGATAAAACCCAACAACTTCCCAGAAGAATGACCAGGTCTTCAGCTTCATCGTCTCCATCCACTTCAAATAACATAGTTGCAGCAAAAGTAACTAGCCTTGAACCTCTAACAATCAATGACCTTTTAGTTGGGGGAGATCCCATCAGCCTAGATGACATAATTTCTAGCTTTCCTGGTAGAAGTAGCCAGATTCTTGAAGTTGTGCGTCATTTGGGACCTTTGAATTCACCAATGCTTCCTTTGTTCGTATATGGAAGTTCTTCTACCGGAAAAACCAGTATCATTCTTCAATTATTCAGAAAAAATGCTGCCAATGGTTATTTGAATGCAAAACGCTGTGAAAGACCATCTGATTTTGTCAATTTTCTTCGAGAAGCATTGACCAATGTTATAAGCAATCTGAAGGAGAAGTCAGAGAAGTTGATCTCAAATGAAATGACTCAAGGGAAAATTGGAAATATGATCTACTTGGTATTTGACAATTTTCAGCTTGTTAGGGAGTGGGATAAGAGTTCTACTATATTGCCCTTGCTGTTTAATCTCTATGATCTGCTAAATACGCCTGAGGTGGGTTTGATTTTTATCAGCAGTACTTCTCCAGATACCTTTTACTCTAACATGGGCTATGTTGAGCCTATCCCCATTTACTTTCCTGATTACACAGAAGAAGATATTCGTCAAATATTATTGAGAAACCAAGTGAACCAGAAGCTATATTCCTCATTTCTGGATGTATCTCTGAAATCTTTCTGTGGAATTACTAAGCAGATTGATGATTTATCTGCTGCCTTAAAGCCACTATATGAAAAATATTGTGAACCTTTAAGTGATAAGGGAAAGGGAGTTGCTCCTAATCAAGAAATGAAGCGAAGGCTGCTTGCTCATATCAACCCTCATATTGCCTCCTCTTTGAATGAGATATTTAAGGTTTCATCTCTTTCTTCAACTGAAGTTGAGACCCGTAAAGAGGAAAAGTGGAAGGGAAATCTTAGGAGATTGGAGCAATCTAAAGAGCTTGTCAGTCTTGATTTTCATATATCTACTAGTGCAAAGTATCTTCTGATTTCAGCATTCCTTGCCTCCAGAAACCCAGCAACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGGAAACGAAAGAGGAAGCCCTCTGAGAAAGCGCAGGAACGGAAGGAAACTTTAGAACAGGAACTACTAATGAAAGGACCCGGAACTTTCCCATTGGAGAGGTTGTTAGCCATCTTTCAATGCCTTGTATCAGTTGCAGAAGAACCATCCGACGAGGAGGAACAAAATAATGATGGATTAGGAGTTGAAGGTGGCAATGGTGGACTGATGTCTGACATTCTTTTGCAGCTATCCAGTCTCTGCAATTCTAATTTTATATTTAAAGGAAGAAGCTGTCCCATTGAAGGCTCAACCCGGTATCGATCAACCATATCTGAAGACCTTGCTTTGAAGGTTGCAAGGAGCTTAGAGTTCCCATTATCAAAGTATTTGTATAGAAGTTAGTAATCTTTGACATCGGTGCATCTCAAAGCTTGGTTGGCTTTTGTCTGTGATATATCTGCCAAGAGTGTATACTACCTCTACTATGCCCTACTGTTATCAACATGAAATGGCTGGAATCCCCTATGAATGCTTGAAGCAAAACCAACGGTATAGAATGGATAATTGTGAACATGGCGGTTCATGGGATGGATGGACTGAGCATTTTACAATGGACAACTGAGTTATTAGGATTTGGTTTATTACTCTCCATGTCTTTAATATTTTGCCAAAAAAGCTTTTTAATATTGCAGATTGTAAGTGGTAAAGATCCTGAAATAAAATTGTGATATGGCACAAAATTTGTGTTGGTGCCAAAAGGAATGTGACCCAGGTCTGATGGATGTTTAATGTGGGGGAAATAGACAACTCTTTCTGACATTTCTTGCTGGTTTTATGTTGAGTTGTAGACTTTCGGAAACATTTTTACTTGAAAATTTGAATACATCATAACGTATAAAGAGCACTGTA

Coding sequences of Glyma.09g258700

Limit To All Plant Sequences

>Glyma.09g258700.1 sequence-type=CDS polypeptide=Glyma.09g258700.1.p locus=Glyma.09g258700 ID=Glyma.09g258700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAAGATAAAACCCAACAACTTCCCAGAAGAATGACCAGGTCTTCAGCTTCATCGTCTCCATCCACTTCAAATAACATAGTTGCAGCAAAAGTAACTAGCCTTGAACCTCTAACAATCAATGACCTTTTAGTTGGGGGAGATCCCATCAGCCTAGATGACATAATTTCTAGCTTTCCTGGTAGAAGTAGCCAGATTCTTGAAGTTGTGCGTCATTTGGGACCTTTGAATTCACCAATGCTTCCTTTGTTCGTATATGGAAGTTCTTCTACCGGAAAAACCAGTATCATTCTTCAATTATTCAGGCATCTCAACAGGCCTATTGTTTTTTCTAGTTGTAGGACATGTTATAACCAGAACATCTTGTTTGAATCTATTCTAAATCAGCTACTTCTCCACAGAAAAAATGCTGCCAATGGTTATTTGAATGCAAAACGCTGTGAAAGACCATCTGATTTTGTCAATTTTCTTCGAGAAGCATTGACCAATGTTATAAGCAATCTGAAGGAGAAGTCAGAGAAGTTGATCTCAAATGAAATGACTCAAGGGAAAATTGGAAATATGATCTACTTGGTATTTGACAATTTTCAGCTTGTTAGGGAGTGGGATAAGAGTTCTACTATATTGCCCTTGCTGTTTAATCTCTATGATCTGCTAAATACGCCTGAGGTGGGTTTGATTTTTATCAGCAGTACTTCTCCAGATACCTTTTACTCTAACATGGGCTATGTTGAGCCTATCCCCATTTACTTTCCTGATTACACAGAAGAAGATATTCGTCAAATATTATTGAGAAACCAAGTGAACCAGAAGCTATATTCCTCATTTCTGGATGTATCTCTGAAATCTTTCTGTGGAATTACTAAGCAGATTGATGATTTATCTGCTGCCTTAAAGCCACTATATGAAAAATATTGTGAACCTTTAAGTGATAAGGGAAAGGGAGTTGCTCCTAATCAAGAAATGAAGCGAAGGCTGCTTGCTCATATCAACCCTCATATTGCCTCCTCTTTGAATGAGATATTTAAGGTTTCATCTCTTTCTTCAACTGAAGTTGAGACCCGTAAAGAGGAAAAGTGGAAGGGAAATCTTAGGAGATTGGAGCAATCTAAAGAGCTTGTCAGTCTTGATTTTCATATATCTACTAGTGCAAAGTATCTTCTGATTTCAGCATTCCTTGCCTCCAGAAACCCAGCAACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGGAAACGAAAGAGGAAGCCCTCTGAGAAAGCGCAGGAACGGAAGGAAACTTTAGAACAGGAACTACTAATGAAAGGACCCGGAACTTTCCCATTGGAGAGGTTGTTAGCCATCTTTCAATGCCTTGTATCAGTTGCAGAAGAACCATCCGACGAGGAGGAACAAAATAATGATGGATTAGGAGTTGAAGGTGGCAATGGTGGACTGATGTCTGACATTCTTTTGCAGCTATCCAGTCTCTGCAATTCTAATTTTATATTTAAAGGAAGAAGCTGTCCCATTGAAGGCTCAACCCGGTATCGATCAACCATATCTGAAGACCTTGCTTTGAAGGTTGCAAGGAGCTTAGAGTTCCCATTATCAAAGTATTTGTATAGAAGTTAG

>Glyma.09g258700.2 sequence-type=CDS polypeptide=Glyma.09g258700.2.p locus=Glyma.09g258700 ID=Glyma.09g258700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAAGATAAAACCCAACAACTTCCCAGAAGAATGACCAGGTCTTCAGCTTCATCGTCTCCATCCACTTCAAATAACATAGTTGCAGCAAAAGTAACTAGCCTTGAACCTCTAACAATCAATGACCTTTTAGTTGGGGGAGATCCCATCAGCCTAGATGACATAATTTCTAGCTTTCCTGGTAGAAGTAGCCAGATTCTTGAAGTTGTGCGTCATTTGGGACCTTTGAATTCACCAATGCTTCCTTTGTTCGTATATGGAAGTTCTTCTACCGGAAAAACCAGTATCATTCTTCAATTATTCAGAAAAAATGCTGCCAATGGTTATTTGAATGCAAAACGCTGTGAAAGACCATCTGATTTTGTCAATTTTCTTCGAGAAGCATTGACCAATGTTATAAGCAATCTGAAGGAGAAGTCAGAGAAGTTGATCTCAAATGAAATGACTCAAGGGAAAATTGGAAATATGATCTACTTGGTATTTGACAATTTTCAGCTTGTTAGGGAGTGGGATAAGAGTTCTACTATATTGCCCTTGCTGTTTAATCTCTATGATCTGCTAAATACGCCTGAGGTGGGTTTGATTTTTATCAGCAGTACTTCTCCAGATACCTTTTACTCTAACATGGGCTATGTTGAGCCTATCCCCATTTACTTTCCTGATTACACAGAAGAAGATATTCGTCAAATATTATTGAGAAACCAAGTGAACCAGAAGCTATATTCCTCATTTCTGGATGTATCTCTGAAATCTTTCTGTGGAATTACTAAGCAGATTGATGATTTATCTGCTGCCTTAAAGCCACTATATGAAAAATATTGTGAACCTTTAAGTGATAAGGGAAAGGGAGTTGCTCCTAATCAAGAAATGAAGCGAAGGCTGCTTGCTCATATCAACCCTCATATTGCCTCCTCTTTGAATGAGATATTTAAGGTTTCATCTCTTTCTTCAACTGAAGTTGAGACCCGTAAAGAGGAAAAGTGGAAGGGAAATCTTAGGAGATTGGAGCAATCTAAAGAGCTTGTCAGTCTTGATTTTCATATATCTACTAGTGCAAAGTATCTTCTGATTTCAGCATTCCTTGCCTCCAGAAACCCAGCAACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGGAAACGAAAGAGGAAGCCCTCTGAGAAAGCGCAGGAACGGAAGGAAACTTTAGAACAGGAACTACTAATGAAAGGACCCGGAACTTTCCCATTGGAGAGGTTGTTAGCCATCTTTCAATGCCTTGTATCAGTTGCAGAAGAACCATCCGACGAGGAGGAACAAAATAATGATGGATTAGGAGTTGAAGGTGGCAATGGTGGACTGATGTCTGACATTCTTTTGCAGCTATCCAGTCTCTGCAATTCTAATTTTATATTTAAAGGAAGAAGCTGTCCCATTGAAGGCTCAACCCGGTATCGATCAACCATATCTGAAGACCTTGCTTTGAAGGTTGCAAGGAGCTTAGAGTTCCCATTATCAAAGTATTTGTATAGAAGTTAG

Predicted protein sequences of Glyma.09g258700

Limit To All Plant Sequences

>Glyma.09g258700.1.p sequence-type=predicted peptide transcript=Glyma.09g258700.1 locus=Glyma.09g258700 ID=Glyma.09g258700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDEDKTQQLPRRMTRSSASSSPSTSNNIVAAKVTSLEPLTINDLLVGGDPISLDDIISSFPGRSSQILEVVRHLGPLNSPMLPLFVYGSSSTGKTSIILQLFRHLNRPIVFSSCRTCYNQNILFESILNQLLLHRKNAANGYLNAKRCERPSDFVNFLREALTNVISNLKEKSEKLISNEMTQGKIGNMIYLVFDNFQLVREWDKSSTILPLLFNLYDLLNTPEVGLIFISSTSPDTFYSNMGYVEPIPIYFPDYTEEDIRQILLRNQVNQKLYSSFLDVSLKSFCGITKQIDDLSAALKPLYEKYCEPLSDKGKGVAPNQEMKRRLLAHINPHIASSLNEIFKVSSLSSTEVETRKEEKWKGNLRRLEQSKELVSLDFHISTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKPSEKAQERKETLEQELLMKGPGTFPLERLLAIFQCLVSVAEEPSDEEEQNNDGLGVEGGNGGLMSDILLQLSSLCNSNFIFKGRSCPIEGSTRYRSTISEDLALKVARSLEFPLSKYLYRS*

>Glyma.09g258700.2.p sequence-type=predicted peptide transcript=Glyma.09g258700.2 locus=Glyma.09g258700 ID=Glyma.09g258700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDEDKTQQLPRRMTRSSASSSPSTSNNIVAAKVTSLEPLTINDLLVGGDPISLDDIISSFPGRSSQILEVVRHLGPLNSPMLPLFVYGSSSTGKTSIILQLFRKNAANGYLNAKRCERPSDFVNFLREALTNVISNLKEKSEKLISNEMTQGKIGNMIYLVFDNFQLVREWDKSSTILPLLFNLYDLLNTPEVGLIFISSTSPDTFYSNMGYVEPIPIYFPDYTEEDIRQILLRNQVNQKLYSSFLDVSLKSFCGITKQIDDLSAALKPLYEKYCEPLSDKGKGVAPNQEMKRRLLAHINPHIASSLNEIFKVSSLSSTEVETRKEEKWKGNLRRLEQSKELVSLDFHISTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKPSEKAQERKETLEQELLMKGPGTFPLERLLAIFQCLVSVAEEPSDEEEQNNDGLGVEGGNGGLMSDILLQLSSLCNSNFIFKGRSCPIEGSTRYRSTISEDLALKVARSLEFPLSKYLYRS*

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