Glyma.09g257100

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Report for Sequence Feature Glyma.09g257100

Feature Type:	gene_model
Chromosome:	Gm09
Start:	47619504
stop:	47623279
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.09g257100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00335.1	AT	RING-H2 finger B1A	JGI	N/A	IEA
GO:0005680	GO-cc	anaphase-promoting complex	JGI	N/A	IEA
GO:0004842	GO-mf	ubiquitin-protein ligase activity	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
KOG1493	KOG	Anaphase-promoting complex (APC), subunit 11	JGI	N/A	IEA
PTHR22766	Panther	RING FINGER PROTEIN 24-RELATED	JGI	N/A	IEA
PTHR22766:SF20	Panther		JGI	N/A	IEA
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI	N/A	IEA

Expression Patterns of Glyma.09g257100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.09g257100 not represented in the dataset	Glyma.09g257100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.09g257100

Paralog	Evidence	Comments
Glyma.18g235300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g257100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma09g39300	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.09g257100

Limit To All Plant Sequences

>Glyma.09g257100.2 sequence-type=transcript locus=Glyma.09g257100 ID=Glyma.09g257100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTAGTAGTCTCGTACGAAAATACCATTGTACTGTGTTATGTCGACGAGAATACAACAGACAAAAAATATTCAAAGATAGAGAGAACCATAACCAAAGCCATAGCATGAGCCACCTTCCTGAAACCCAATTCCTTAACAGTttctcacccttctcttctcttctcttcatctactcttttcAAAAAGAATAGATGCATGAAGTCTGGTGACCTCTGATCTGATTCCCTCTTGATGTCAAACAACAGAAGAGAACGAAACTATCAATTATTTATTTCATTAAGTAAAAAGAATTAGTGGAAAATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGGGCACCAGTATATTACTATTGCCCACCAACTTTTGAAGAGCGTGAGTCTTTAACATCTAATAATGGCACGAATGCTTCAGTCAATGCTGGATTTCTCATTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGTCCCCTCCCGTGCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCTTACATCGCCAAGGAAGGCACAACTACCAAAATCAAATGTAACTCAAGTATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGTAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAACGAAGTGACTCCTGTCCTATTTGTGATCAGGAGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCAATCAAAGCTTGTTAAATGAATGGAAGATAGATGAAGATCATTGTATGATAACTGGTTAGATGATGGCAACTACAGATTCATTTTCGATTGGTGGTGCATTGACAAAGTCATCATTTTAGTAGGCCCAGCCTTTGGTCACGAGGTTTTGACGGAATGCCATACCATATGATATAGCATATCTCTTCAAATGCAATTCCTTTGGTCAGAATTTGCCCGTTATTATTAGTGTGAAAAAATGCGGCAACTCTGTAGATGCCAACATTTATTTTCACAGATGCTTTTCTATTTATTTACTGCTCTCCATTCTCTTTTGTAAAAAAATTCTCAATATTTATTTGTCATGCCTGATTTACATTTTCATTGTATATATATACACTAGTGGATTCTTGGGGTTCAGTGTTTTTGCAATAAGTACTTAATTATCAAGTATACAATAAGACCCTTTTCCTATTAAATTTTATTCACTCCATT

Coding sequences of Glyma.09g257100

Limit To All Plant Sequences

>Glyma.09g257100.1 sequence-type=CDS polypeptide=Glyma.09g257100.1.p locus=Glyma.09g257100 ID=Glyma.09g257100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGGGCACCAGTATATTACTATCAATGGTGGAGCGAAGAACTAATTACTGAAGGAAAAATCAAACTATTTCATAATCAACTTGCTATTGAAAGCCTTAAAATGTGCCCACCAACTTTTGAAGAGCGTGAGTCTTTAACATCTAATAATGGCACGAATGCTTCAGTCAATGCTGGATTTCTCATTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGTCCCCTCCCGTGCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCTTACATCGCCAAGGAAGGCACAACTACCAAAATCAAATGTAACTCAAGTATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGTAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAACGAAGTGACTCCTGTCCTATTTGTGATCAGGAGATGATATTTTGA

>Glyma.09g257100.2 sequence-type=CDS polypeptide=Glyma.09g257100.2.p locus=Glyma.09g257100 ID=Glyma.09g257100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGGGCACCAGTATATTACTATTGCCCACCAACTTTTGAAGAGCGTGAGTCTTTAACATCTAATAATGGCACGAATGCTTCAGTCAATGCTGGATTTCTCATTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGTCCCCTCCCGTGCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACATATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTTAATTACACGTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCTTACATCGCCAAGGAAGGCACAACTACCAAAATCAAATGTAACTCAAGTATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGTAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAACGAAGTGACTCCTGTCCTATTTGTGATCAGGAGATGATATTTTGA

Predicted protein sequences of Glyma.09g257100

Limit To All Plant Sequences

>Glyma.09g257100.1.p sequence-type=predicted peptide transcript=Glyma.09g257100.1 locus=Glyma.09g257100 ID=Glyma.09g257100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGCCCSARKPHLQGAPVYYYQWWSEELITEGKIKLFHNQLAIESLKMCPPTFEERESLTSNNGTNASVNAGFLIGLNLEASMPDTFQSPPVPLPYDMVLGGSASTYSESGRETVSSFETLITREDVEESDCKAQANSALTSPRKAQLPKSNVTQVLVTEEEDVCPICLEEYDVENPSNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF*

>Glyma.09g257100.2.p sequence-type=predicted peptide transcript=Glyma.09g257100.2 locus=Glyma.09g257100 ID=Glyma.09g257100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNNGTNASVNAGFLIGLNLEASMPDTFQSPPVPLPYDMVLGGSASTYSESGRETVSSFETLITREDVEESDCKAQANSALTSPRKAQLPKSNVTQVLVTEEEDVCPICLEEYDVENPSNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF*

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