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Report for Sequence Feature Glyma.09g254700

Feature Type:gene_model
Chromosome:Gm09
Start:47394814
stop:47399070
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g254700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46110.1AT ketopantoate hydroxymethyltransferase 1 JGI N/AIEA
GO:0015940GO-bp pantothenate biosynthetic process EnsemblGenomesN/AIEA
GO:0015940GO-bp pantothenate biosynthetic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003864GO-mf 3-methyl-2-oxobutanoate hydroxymethyltransferase activity EnsemblGenomesN/AIEA
GO:0003864GO-mf 3-methyl-2-oxobutanoate hydroxymethyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG2949 KOG Ketopantoate hydroxymethyltransferase JGI N/AIEA
PTHR20881Panther 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE JGI N/AIEA
PF02548PFAM Ketopantoate hydroxymethyltransferase JGI N/AIEA
PANTO-PWYSoyCyc9 phosphopantothenate biosynthesis I Plant Metabolic Network ISS
GN7V-53644SoyCyc9-rxn 3-methyl-2-oxobutanoate hydroxymethyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.09g254700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g254700
ParalogEvidenceComments
Glyma.18g238300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g254700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g39030 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.09g254700
>Glyma.09g254700.2 sequence-type=transcript locus=Glyma.09g254700 ID=Glyma.09g254700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAACCAACATATGCACCCATTGTTCACCGAATACCAGAAAAGTGAAATTCACACAAAAAATCACAGCATCACTCATTTCCAATTCTGTGTTTGCCATAATGCAATTCCTAGTAGCACTTTCAAGAGCTTCTTCCACTGTAACCAACCATTGTCTGCGCCACCTCCGCAGCACGTGCAACGTGGCGGCGGAGAAGGTGACGCTGACCCGGTTGAAGCAGAAGCACCGCAAGCAAGAACCCATCACCGTGGTCTCCACCCACGACTACCCTTCAGCGGTGCATGTCGACGTGGCAGGCATAGATGTCTGCCACGTCGGAGACTCTGTGTCCATGGTGATCCATGGACACGACACCACCATTCCGATCACCCTCGAACAAATGCTTGCTAAGAGGCCTCTTCTCGTTGGAGACTTGCCATTTGGAACCTATGAATCCAGCTCCAATCAGGCAGTTGATACAGCAGTACGTATGTTAAAGGAAGGAAACATGGATGCCATAAAGCTTGAAGGAGGGTCAACTTCAAGGGTTGTTGCAGCAAAGGCCATTGTTGAAGCTGGAATAGCAGTCATGGGACATGTGGGACTTACTCCTCAGGCCATTAGTGTTTTGGGGGGATTTAGACCTCAAGGAAGGACTGTTGCTAGTGCTATCAAGGTTGTGGAGATGGCATTGGCTTTTCAGGAAGCTGGGTGCTTTTCTGTTGTTATAGAATGTGTGCCTGCACCTGTGGCGGCTGCTGTTACAGCAGCACTTCAGATTCCTACTATTGGAATTGGGGCTGGTCCATTTTGCAGTGGCCAGGTTAGTCCAAAATTTTGTAAACAGTATGCCTGTGTTGGAAAAGTTATCAAACAAGCCTTATTAGAATACAAGGAAGATGTGATAAATGGTTCATTTCCTGGCTCTCTCCATATCCCATATAAAATCTGTGAAGCTGAAGCAAATGGTTTTATAAATGAATTGCAAAGATTGGGTTTGGACAAGGCAGCATCTGCAGCAGTTGAAGCAGTTCAAAATATGGATACTTCCAAATCAAATGGTAAAGGAAACTCAACAAAGGACTAAAACAGTATTTTAGTCCCTAAAAAAATTGAGGTCAATCACATTAGTCCTGAAAGATGAAAATCATTATTTTCATCCTTGAAAGGGGAAATAGTTGATCACTTTAATCCTTTTCAGAGACTGAATTACCGTTAAAATGGGATTAAATTGTTTGATTTTTTCATCTTTCAGGAACAAAAATGATGATTTTTATCTTTCAAAGAGTAATATGATAGATTTCAAATTTTTCAGAGATCAAAATCGTCTTTAATTTTCAAGAAGTGAACAATTTAATAAAGATACAGTTGACGCTAACAAGCGACAAAGTTTCTATCAACGAAGTGAATAACTTGTACTGTGTTGCTGTACTCTAATTCTGGCTTATCAAATGTTTCTATCAGTAAAAGTATAAAACC
Coding sequences of Glyma.09g254700
>Glyma.09g254700.1 sequence-type=CDS polypeptide=Glyma.09g254700.1.p locus=Glyma.09g254700 ID=Glyma.09g254700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTCCTAGTAGCACTTTCAAGAGCTTCTTCCACTGTAACCAACCATTGTCTGCGCCACCTCCGCAGCACGTGCAACGTGGCGGCGGAGAAGGTGACGCTGACCCGGTTGAAGCAGAAGCACCGCAAGCAAGAACCCATCACCGTGGTCTCCACCCACGACTACCCTTCAGCGGTGCATGTCGACGTGGCAGGCATAGATGTCTGCCACGTCGGAGACTCTGTGTCCATGGTGATCCATGGACACGACACCACCATTCCGATCACCCTCGAACAAATGCTTGCTAAGAGGCCTCTTCTCGTTGGAGACTTGCCATTTGGAACCTATGAATCCAGCTCCAATCAGGCAGTTGATACAGCAGTACGTATGTTAAAGGAAGGAAACATGGATGCCATAAAGCTTGAAGGAGGGTCAACTTCAAGGGTTGTTGCAGCAAAGGCCATTGTTGAAGCTGGAATAGCAGTCATGGGACATGTGGGACTTACTCCTCAGGCCATTAGTGTTTTGGGGGGATTTAGACCTCAAGGAAGGACTGTTGCTAGTGCTATCAAGGTTGTGGAGATGGCATTGGCTTTTCAGGAAGCTGGGTGCTTTTCTGTTGTTATAGAATGTGTGCCTGCACCTGTGGCGGCTGCTGTTACAGCAGCACTTCAGATTCCTACTATTGGAATTGGGGCTGGTCCATTTTGCAGTGGCCAGGTGCTAGTTTTCCATGATCTGCTTGGTATGCTGCAACACCCTCATGCTAAAGTTAGTCCAAAATTTTGTAAACAGTATGCCTGTGTTGGAAAAGTTATCAAACAAGCCTTATTAGAATACAAGGAAGATGTGATAAATGGTTCATTTCCTGGCTCTCTCCATATCCCATATAAAATCTGTGAAGCTGAAGCAAATGGTTTTATAAATGAATTGCAAAGATTGGGTTTGGACAAGGCAGCATCTGCAGCAGTTGAAGCAGTTCAAAATATGGATACTTCCAAATCAAATGGTAAAGGAAACTCAACAAAGGACTAA

>Glyma.09g254700.2 sequence-type=CDS polypeptide=Glyma.09g254700.2.p locus=Glyma.09g254700 ID=Glyma.09g254700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAATTCCTAGTAGCACTTTCAAGAGCTTCTTCCACTGTAACCAACCATTGTCTGCGCCACCTCCGCAGCACGTGCAACGTGGCGGCGGAGAAGGTGACGCTGACCCGGTTGAAGCAGAAGCACCGCAAGCAAGAACCCATCACCGTGGTCTCCACCCACGACTACCCTTCAGCGGTGCATGTCGACGTGGCAGGCATAGATGTCTGCCACGTCGGAGACTCTGTGTCCATGGTGATCCATGGACACGACACCACCATTCCGATCACCCTCGAACAAATGCTTGCTAAGAGGCCTCTTCTCGTTGGAGACTTGCCATTTGGAACCTATGAATCCAGCTCCAATCAGGCAGTTGATACAGCAGTACGTATGTTAAAGGAAGGAAACATGGATGCCATAAAGCTTGAAGGAGGGTCAACTTCAAGGGTTGTTGCAGCAAAGGCCATTGTTGAAGCTGGAATAGCAGTCATGGGACATGTGGGACTTACTCCTCAGGCCATTAGTGTTTTGGGGGGATTTAGACCTCAAGGAAGGACTGTTGCTAGTGCTATCAAGGTTGTGGAGATGGCATTGGCTTTTCAGGAAGCTGGGTGCTTTTCTGTTGTTATAGAATGTGTGCCTGCACCTGTGGCGGCTGCTGTTACAGCAGCACTTCAGATTCCTACTATTGGAATTGGGGCTGGTCCATTTTGCAGTGGCCAGGTTAGTCCAAAATTTTGTAAACAGTATGCCTGTGTTGGAAAAGTTATCAAACAAGCCTTATTAGAATACAAGGAAGATGTGATAAATGGTTCATTTCCTGGCTCTCTCCATATCCCATATAAAATCTGTGAAGCTGAAGCAAATGGTTTTATAAATGAATTGCAAAGATTGGGTTTGGACAAGGCAGCATCTGCAGCAGTTGAAGCAGTTCAAAATATGGATACTTCCAAATCAAATGGTAAAGGAAACTCAACAAAGGACTAA
Predicted protein sequences of Glyma.09g254700
>Glyma.09g254700.1.p sequence-type=predicted peptide transcript=Glyma.09g254700.1 locus=Glyma.09g254700 ID=Glyma.09g254700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQFLVALSRASSTVTNHCLRHLRSTCNVAAEKVTLTRLKQKHRKQEPITVVSTHDYPSAVHVDVAGIDVCHVGDSVSMVIHGHDTTIPITLEQMLAKRPLLVGDLPFGTYESSSNQAVDTAVRMLKEGNMDAIKLEGGSTSRVVAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTVASAIKVVEMALAFQEAGCFSVVIECVPAPVAAAVTAALQIPTIGIGAGPFCSGQVLVFHDLLGMLQHPHAKVSPKFCKQYACVGKVIKQALLEYKEDVINGSFPGSLHIPYKICEAEANGFINELQRLGLDKAASAAVEAVQNMDTSKSNGKGNSTKD*

>Glyma.09g254700.2.p sequence-type=predicted peptide transcript=Glyma.09g254700.2 locus=Glyma.09g254700 ID=Glyma.09g254700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQFLVALSRASSTVTNHCLRHLRSTCNVAAEKVTLTRLKQKHRKQEPITVVSTHDYPSAVHVDVAGIDVCHVGDSVSMVIHGHDTTIPITLEQMLAKRPLLVGDLPFGTYESSSNQAVDTAVRMLKEGNMDAIKLEGGSTSRVVAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTVASAIKVVEMALAFQEAGCFSVVIECVPAPVAAAVTAALQIPTIGIGAGPFCSGQVSPKFCKQYACVGKVIKQALLEYKEDVINGSFPGSLHIPYKICEAEANGFINELQRLGLDKAASAAVEAVQNMDTSKSNGKGNSTKD*






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