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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G46110.1 | AT | ketopantoate hydroxymethyltransferase 1 | JGI | N/A | IEA |
| GO:0015940 | GO-bp | pantothenate biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0015940 | GO-bp | pantothenate biosynthetic process | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003864 | GO-mf | 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0003864 | GO-mf | 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG2949 | KOG | Ketopantoate hydroxymethyltransferase | JGI | N/A | IEA |
| PTHR20881 | Panther | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE | JGI | N/A | IEA |
| PF02548 | PFAM | Ketopantoate hydroxymethyltransferase | JGI | N/A | IEA |
| PANTO-PWY | SoyCyc9 | phosphopantothenate biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-53644 | SoyCyc9-rxn | 3-methyl-2-oxobutanoate hydroxymethyltransferase | Plant Metabolic Network | ISS |
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Glyma.09g254700 not represented in the dataset |
Glyma.09g254700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.18g238300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g39030 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g254700.2 sequence-type=transcript locus=Glyma.09g254700 ID=Glyma.09g254700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 GTAACCAACATATGCACCCATTGTTCACCGAATACCAGAAAAGTGAAATTCACACAAAAAATCACAGCATCACTCATTTCCAATTCTGTGTTTGCCATAATGCAATTCCTAGTAGCACTTTCAAGAGCTTCTTCCACTGTAACCAACCATTGTCTGCGCCACCTCCGCAGCACGTGCAACGTGGCGGCGGAGAAGGTGACGCTGACCCGGTTGAAGCAGAAGCACCGCAAGCAAGAACCCATCACCGTGGTCTCCACCCACGACTACCCTTCAGCGGTGCATGTCGACGTGGCAGGCATAGATGTCTGCCACGTCGGAGACTCTGTGTCCATGGTGATCCATGGACACGACACCACCATTCCGATCACCCTCGAACAAATGCTTGCTAAGAGGCCTCTTCTCGTTGGAGACTTGCCATTTGGAACCTATGAATCCAGCTCCAATCAGGCAGTTGATACAGCAGTACGTATGTTAAAGGAAGGAAACATGGATGCCATAAAGCTTGAAGGAGGGTCAACTTCAAGGGTTGTTGCAGCAAAGGCCATTGTTGAAGCTGGAATAGCAGTCATGGGACATGTGGGACTTACTCCTCAGGCCATTAGTGTTTTGGGGGGATTTAGACCTCAAGGAAGGACTGTTGCTAGTGCTATCAAGGTTGTGGAGATGGCATTGGCTTTTCAGGAAGCTGGGTGCTTTTCTGTTGTTATAGAATGTGTGCCTGCACCTGTGGCGGCTGCTGTTACAGCAGCACTTCAGATTCCTACTATTGGAATTGGGGCTGGTCCATTTTGCAGTGGCCAGGTTAGTCCAAAATTTTGTAAACAGTATGCCTGTGTTGGAAAAGTTATCAAACAAGCCTTATTAGAATACAAGGAAGATGTGATAAATGGTTCATTTCCTGGCTCTCTCCATATCCCATATAAAATCTGTGAAGCTGAAGCAAATGGTTTTATAAATGAATTGCAAAGATTGGGTTTGGACAAGGCAGCATCTGCAGCAGTTGAAGCAGTTCAAAATATGGATACTTCCAAATCAAATGGTAAAGGAAACTCAACAAAGGACTAAAACAGTATTTTAGTCCCTAAAAAAATTGAGGTCAATCACATTAGTCCTGAAAGATGAAAATCATTATTTTCATCCTTGAAAGGGGAAATAGTTGATCACTTTAATCCTTTTCAGAGACTGAATTACCGTTAAAATGGGATTAAATTGTTTGATTTTTTCATCTTTCAGGAACAAAAATGATGATTTTTATCTTTCAAAGAGTAATATGATAGATTTCAAATTTTTCAGAGATCAAAATCGTCTTTAATTTTCAAGAAGTGAACAATTTAATAAAGATACAGTTGACGCTAACAAGCGACAAAGTTTCTATCAACGAAGTGAATAACTTGTACTGTGTTGCTGTACTCTAATTCTGGCTTATCAAATGTTTCTATCAGTAAAAGTATAAAACC
>Glyma.09g254700.1 sequence-type=CDS polypeptide=Glyma.09g254700.1.p locus=Glyma.09g254700 ID=Glyma.09g254700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAATTCCTAGTAGCACTTTCAAGAGCTTCTTCCACTGTAACCAACCATTGTCTGCGCCACCTCCGCAGCACGTGCAACGTGGCGGCGGAGAAGGTGACGCTGACCCGGTTGAAGCAGAAGCACCGCAAGCAAGAACCCATCACCGTGGTCTCCACCCACGACTACCCTTCAGCGGTGCATGTCGACGTGGCAGGCATAGATGTCTGCCACGTCGGAGACTCTGTGTCCATGGTGATCCATGGACACGACACCACCATTCCGATCACCCTCGAACAAATGCTTGCTAAGAGGCCTCTTCTCGTTGGAGACTTGCCATTTGGAACCTATGAATCCAGCTCCAATCAGGCAGTTGATACAGCAGTACGTATGTTAAAGGAAGGAAACATGGATGCCATAAAGCTTGAAGGAGGGTCAACTTCAAGGGTTGTTGCAGCAAAGGCCATTGTTGAAGCTGGAATAGCAGTCATGGGACATGTGGGACTTACTCCTCAGGCCATTAGTGTTTTGGGGGGATTTAGACCTCAAGGAAGGACTGTTGCTAGTGCTATCAAGGTTGTGGAGATGGCATTGGCTTTTCAGGAAGCTGGGTGCTTTTCTGTTGTTATAGAATGTGTGCCTGCACCTGTGGCGGCTGCTGTTACAGCAGCACTTCAGATTCCTACTATTGGAATTGGGGCTGGTCCATTTTGCAGTGGCCAGGTGCTAGTTTTCCATGATCTGCTTGGTATGCTGCAACACCCTCATGCTAAAGTTAGTCCAAAATTTTGTAAACAGTATGCCTGTGTTGGAAAAGTTATCAAACAAGCCTTATTAGAATACAAGGAAGATGTGATAAATGGTTCATTTCCTGGCTCTCTCCATATCCCATATAAAATCTGTGAAGCTGAAGCAAATGGTTTTATAAATGAATTGCAAAGATTGGGTTTGGACAAGGCAGCATCTGCAGCAGTTGAAGCAGTTCAAAATATGGATACTTCCAAATCAAATGGTAAAGGAAACTCAACAAAGGACTAA >Glyma.09g254700.2 sequence-type=CDS polypeptide=Glyma.09g254700.2.p locus=Glyma.09g254700 ID=Glyma.09g254700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAATTCCTAGTAGCACTTTCAAGAGCTTCTTCCACTGTAACCAACCATTGTCTGCGCCACCTCCGCAGCACGTGCAACGTGGCGGCGGAGAAGGTGACGCTGACCCGGTTGAAGCAGAAGCACCGCAAGCAAGAACCCATCACCGTGGTCTCCACCCACGACTACCCTTCAGCGGTGCATGTCGACGTGGCAGGCATAGATGTCTGCCACGTCGGAGACTCTGTGTCCATGGTGATCCATGGACACGACACCACCATTCCGATCACCCTCGAACAAATGCTTGCTAAGAGGCCTCTTCTCGTTGGAGACTTGCCATTTGGAACCTATGAATCCAGCTCCAATCAGGCAGTTGATACAGCAGTACGTATGTTAAAGGAAGGAAACATGGATGCCATAAAGCTTGAAGGAGGGTCAACTTCAAGGGTTGTTGCAGCAAAGGCCATTGTTGAAGCTGGAATAGCAGTCATGGGACATGTGGGACTTACTCCTCAGGCCATTAGTGTTTTGGGGGGATTTAGACCTCAAGGAAGGACTGTTGCTAGTGCTATCAAGGTTGTGGAGATGGCATTGGCTTTTCAGGAAGCTGGGTGCTTTTCTGTTGTTATAGAATGTGTGCCTGCACCTGTGGCGGCTGCTGTTACAGCAGCACTTCAGATTCCTACTATTGGAATTGGGGCTGGTCCATTTTGCAGTGGCCAGGTTAGTCCAAAATTTTGTAAACAGTATGCCTGTGTTGGAAAAGTTATCAAACAAGCCTTATTAGAATACAAGGAAGATGTGATAAATGGTTCATTTCCTGGCTCTCTCCATATCCCATATAAAATCTGTGAAGCTGAAGCAAATGGTTTTATAAATGAATTGCAAAGATTGGGTTTGGACAAGGCAGCATCTGCAGCAGTTGAAGCAGTTCAAAATATGGATACTTCCAAATCAAATGGTAAAGGAAACTCAACAAAGGACTAA
>Glyma.09g254700.1.p sequence-type=predicted peptide transcript=Glyma.09g254700.1 locus=Glyma.09g254700 ID=Glyma.09g254700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQFLVALSRASSTVTNHCLRHLRSTCNVAAEKVTLTRLKQKHRKQEPITVVSTHDYPSAVHVDVAGIDVCHVGDSVSMVIHGHDTTIPITLEQMLAKRPLLVGDLPFGTYESSSNQAVDTAVRMLKEGNMDAIKLEGGSTSRVVAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTVASAIKVVEMALAFQEAGCFSVVIECVPAPVAAAVTAALQIPTIGIGAGPFCSGQVLVFHDLLGMLQHPHAKVSPKFCKQYACVGKVIKQALLEYKEDVINGSFPGSLHIPYKICEAEANGFINELQRLGLDKAASAAVEAVQNMDTSKSNGKGNSTKD* >Glyma.09g254700.2.p sequence-type=predicted peptide transcript=Glyma.09g254700.2 locus=Glyma.09g254700 ID=Glyma.09g254700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQFLVALSRASSTVTNHCLRHLRSTCNVAAEKVTLTRLKQKHRKQEPITVVSTHDYPSAVHVDVAGIDVCHVGDSVSMVIHGHDTTIPITLEQMLAKRPLLVGDLPFGTYESSSNQAVDTAVRMLKEGNMDAIKLEGGSTSRVVAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTVASAIKVVEMALAFQEAGCFSVVIECVPAPVAAAVTAALQIPTIGIGAGPFCSGQVSPKFCKQYACVGKVIKQALLEYKEDVINGSFPGSLHIPYKICEAEANGFINELQRLGLDKAASAAVEAVQNMDTSKSNGKGNSTKD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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