SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09g250300

Feature Type:gene_model
Chromosome:Gm09
Start:47112001
stop:47114615
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g250300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16450.1AT Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase JGI N/AIEA
GO:0043086GO-bp negative regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0051252GO-bp regulation of RNA metabolic process EnsemblGenomesN/AIEA
GO:0008428GO-mf ribonuclease inhibitor activity EnsemblGenomesN/AIEA
GO:0008948GO-mf oxaloacetate decarboxylase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0047443GO-mf 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity EnsemblGenomesN/AIEA
PF03737PFAM Demethylmenaquinone methyltransferase JGI N/AIEA
GN7V-65336SoyCyc9-rxn malate dehydrogenase (oxaloacetate-decarboxylating) Plant Metabolic Network ISS

Expression Patterns of Glyma.09g250300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g250300
ParalogEvidenceComments
Glyma.18g242200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g250300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g38560 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g250300
>Glyma.09g250300.1 sequence-type=CDS polypeptide=Glyma.09g250300.1.p locus=Glyma.09g250300 ID=Glyma.09g250300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTTCGTCACCACTGCTGAAGTGTGTGATGCGAACCCCCAGTTAATTTTGAGTGGGGAGCTTCGTGCCCTTCAGCCAGTTTTTCAGATTTACGGTCGTCGACAGGTCTTCTCTGGACCTATAGTTACCTTGAAGGTGTTTGAAGACAATGTTTTGGTTCGTGAGTTCCTTGAAGAGAAAGGCAATGGAAGAGTGCTTGTTGTTGATGGAGGCGCGAGTTTACGCTGTGCTATATTGGGTGGCAACCCTGTGGTACAAGCTCAAAACAATGGATGGGCAGGTATTGTTGTGAATGGATGTATAAGAGATGTGGATGAGATCAATGGTTGTGATATTGGAGTGAGAGCCCTAGCTTCCCATCCCATGAAAGCCAATAAAAAAGGCATGGGAGAGAAGCATGTTCCTGTAAATATTGCTGGGACAAGGATCAGTGATGGGGATTGGCTCTATGCAGACACTGATGGAATTCTGATCTCTCGAACAGAGCTGTCTGTTTGA
Predicted protein sequences of Glyma.09g250300
>Glyma.09g250300.1.p sequence-type=predicted peptide transcript=Glyma.09g250300.1 locus=Glyma.09g250300 ID=Glyma.09g250300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFVTTAEVCDANPQLILSGELRALQPVFQIYGRRQVFSGPIVTLKVFEDNVLVREFLEEKGNGRVLVVDGGASLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGMGEKHVPVNIAGTRISDGDWLYADTDGILISRTELSV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo